CX297911
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 9.136e-25 Identity = 48/94 (51.06%), Postives = 76/94 (80.85%), Query Frame = 2 Query: 26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307 HITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG Sbjct: 386 HITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22 Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = 2 Query: 26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307 +ITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ GK L DF + +K++ L+ +VE+F+S F +PG Sbjct: 363 NITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20 Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 2 Query: 29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 307 I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G LK+F + L +K ++AL+ +VE FAS F +PG Sbjct: 382 IACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20 Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = 2 Query: 23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 337 +HI NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+ +AVT+ L+++ E G LKDF + ++ I++ L+ +VE+FA F GF+ MKYK+ Sbjct: 408 VHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20 Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 2 Query: 29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 307 I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G LK+F + L +K ++AL+ VE FAS F +PG Sbjct: 382 IACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20 Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 331 +HI NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+ AV+L L+++ E G LKDF + L + +I LK DVE+FA F GF+ + MKY Sbjct: 409 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19 Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 2 Query: 26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 307 HI NKN GD SAL PGG+R+GTPA+TSRG E+DFE++G+F+H V + + E GK LKDF N KD+ L VE+F++ F++PG Sbjct: 406 HIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 2 Query: 23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 337 +HI NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F AV + ++++ E G LKDF L ++ +I L+ DVE++A F GF+ MKYK+ Sbjct: 409 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19 Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 2 Query: 29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 307 I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G LK+F + L + + + AL+ +VE FA+ F +PG Sbjct: 382 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19 Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 2 Query: 29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 307 I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F+HR + LTL+IQ LK+F + L ++ I++ L+ +VE FAS+F +PG Sbjct: 376 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474 The following BLAST results are available for this feature:
BLAST of CX297911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297911 ID=CX297911; Name=CX297911; organism=Citrus clementina; type=EST; length=577bpback to top |