CX297911

Overview
NameCX297911
Unique NameCX297911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNK---DIEALKADVEKFASSFDM 301
            ++I  NKN V  D SA +P G+R+GTPAMT+RG  E+DF ++ +++ RA+T    +QKE  K    LKDF   L   +   ++  L+ +V ++ASSF +
Sbjct:  365 INIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFPL 463          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 2
Query:   26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-KEYGK----LLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307
            +I  NKN V GD SAL P G+R+GTPAMT+RG   ++F+++ EF+ +AV + +E++ +E GK    LL  F K    +  ++ L  +V  + S + +PG
Sbjct:  393 NIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-------KEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307
            ++I  NKN + GD SAL P G+R+GTPAMT+RG  E+DF+++ E++  AV L++ ++       K+    L  F +    ++ ++ L  +V  +  +F +PG
Sbjct:  382 INIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDMP 304
            ++I +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  +++RAV +   IQ+   K    LKDF   +    D I  L  ++  +   + +P
Sbjct:  371 INIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGTDEIAQLAQEIYSWTEEYPLP 468          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKDI-EALKADVEKFASSFDM 301
            ++I +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I +++++AV    ++Q+   K    LKDF   +    D+    K ++  +A  + +
Sbjct:  371 INIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGSDVLNTWKKEIYDWAGEYPL 467          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK------------EYGKLLKDFNKGLVNNK---DIEALKADVEKFASSFDMP 304
            +  NKN V GD SAL PGG+RIGTPAMT+RG  E+DF ++ + + RAVT+ + I K            +    +K F   L N +   +I  L+++VE +  ++  P
Sbjct:  416 VAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYPCP 522          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMP 304
            ++I+ NKN V GD SAL P G+R+GTPA T+RG  EKDFE++ E +   V+LT +I     KE     +DF K  V +     +I  LK +V  +A  FD P
Sbjct:  371 VNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDF-KAYVGDGSKFSEIAKLKKEVITWAGKFDFP 471          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL-----TLE--IQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307
            L+I  NKN + GD SAL P G+RIGTPAMT+RG   ++F Q+ +++  AV L     TLE   + +    L +F K    + ++ AL  ++ K+   + +PG
Sbjct:  387 LNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD-------IEALKADVEKFASSFDMPG 307
            ++I  NKN + GD SAL P G+R+GTPAMT+RG   ++F Q+  ++ RAV L + I+ +     KD    L + K+       ++ L  +V ++   F +PG
Sbjct:  395 INIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 301
            ++I +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  ++ +AV    + Q    K    LKDF   +    D +  LK ++  + + + +
Sbjct:  371 INIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVDEIADQLAPLKKEIYDWTAEYPL 467          
The following BLAST results are available for this feature:
BLAST of CX297911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GLYD_SCHPO3.601e-1340.40Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_CANAL8.022e-1339.39Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA1.048e-1234.31Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ASHGO1.048e-1240.82Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST1.787e-1238.14Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYM_NEUCR3.048e-1237.38Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_SCHPO3.981e-1243.14Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_YEAST8.869e-1237.25Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA1.976e-1135.29Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA9.806e-1138.14Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionC06006E09SK RindPdig24 Citrus clementina cDNA clone C06006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297911 ID=CX297911; Name=CX297911; organism=Citrus clementina; type=EST; length=577bp
GATTCGGCCGAGGCTGTGACCTTTGCACATTACTGTGAACAAGAATGCTG
TGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGTACT
CCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAATTGG
AGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGGAGT
ATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAGGAC
ATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGACAT
GCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAAAGT
ATCATCATTATTGTTACTGTGTTGTTAGCAACTCTTTAGTGTTGAAAAAC
AGAAAGAGAAGAAAAAAAATTGCATGCATCTTTGCCTTTTGTTGTCCTAG
GTTTAAACGCTTTCGTTTTAATTTTTTTTTTTTTTAATTGGTACCCACCA
TATTGTGAAAGCGAGATCCGTTTCTCTTTGGTCAAATGATGATTGTTCAT
CTACAAATAAAACAACAAATTTATGTA
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