CX299666

Overview
NameCX299666
Unique NameCX299666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_XENLA (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 78/185 (42.16%), Postives = 98/185 (52.97%), Query Frame = 2
Query:    8 AFVSVPWMLLPKPFILKMQHQDR-HQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXX---ATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            A + VPWML+ KP IL+ Q+  R H G               +  E +Q    S+  D   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+ +                       T+ +LL+ME LSAFLHALRLHWVEF+NKFY G G+KF PFSF
Sbjct:  643 AIICVPWMLVLKPLILRRQYLRRKHLGTHNFGGIRVGNGPTEEDAEIIQHDQLSMHSDEEEEFDFGDTVVH------QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVMHIGLNIRSLGGGIALVFIFSAFATLTIAILLIMEGLSAFLHALRLHWVEFRNKFYMGTGFKFLPFSF 821          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP3_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 3 OS=Homo sapiens GN=TCIRG1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 82/188 (43.62%), Postives = 96/188 (51.06%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQ--------DRHQGQSYEALQSTDESLQPDTNH-------DXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXXA-----TVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFA 508
            LA   VP +LL  P  L  +H+        DR +      L   D S+   ++        D               Q IHTIEF LG VSNTASYLRLWALSLAH++LS V +  V+ +                   A     TV +LLVME LSAFLHALRLHWVEFQNKFY G GYK SPF+FA
Sbjct:  639 LALAMVPILLLGTPLHLLHRHRRRLRRRPADRQEENKAGLLDLPDASVNGWSSDEEKAGGLDDEEEAELVPSEVLMHQAIHTIEFCLGCVSNTASYLRLWALSLAHAQLSEVLWAMVMRIGLGLGREVGVAAVVLVPIFAAFAVMTVAILLVMEGLSAFLHALRLHWVEFQNKFYSGTGYKLSPFTFA 826          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_CAEEL (Probable V-type proton ATPase 116 kDa subunit a OS=Caenorhabditis elegans GN=unc-32 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 77/189 (40.74%), Postives = 99/189 (52.38%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXX-------------------QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXX---ATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            LA V VP ML  KP+ L  + + + +  +  A  +  +S++ D N D                                  Q IHTIEFVLG VS+TASYLRLWALSLAH++LS V +  V   A+                     +V +L++ME LSAFLHALRLHWVEFQ+KFY G GY+F+PFSF
Sbjct:  703 LALVQVPIMLFAKPYFLYRRDKQQSRYSTLTAESNQHQSVRADINQDDAEVVHAPEQTPKPSGHGHGHGDGPLEMGDVMVYQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSDVLWTMVFRNAFVLDGYTGAIATYILFFIFGSLSVFILVLMEGLSAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 891          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPH1_SCHPO (V-type proton ATPase subunit a OS=Schizosaccharomyces pombe GN=vph1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 71/176 (40.34%), Postives = 94/176 (53.41%), Query Frame = 2
Query:    8 AFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQS-------TDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAW---XXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            A + VPW+L+ KPF+L  +H +      Y++L S        D  +  D+                  Q+IHTIEF LG VS+TASYLRLWALSLAH++LSSV +   L   +                    AT  VL+ ME  SA LH+LRLHWVE  +K +EG+GY F+PF+F
Sbjct:  629 ALICVPWLLIVKPFVLWRRHSNEEN--KYQSLNSDLPNVDEADALMAVDSQEKQAEPFELGEVVIH--QVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWNMTLANGFRMTGIVGSIFVVILFGFWFIATCVVLVAMEGTSAMLHSLRLHWVEGMSKHFEGEGYAFTPFTF 800          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP2_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 2 OS=Homo sapiens GN=ATP6V0A2 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  191 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFA 508
            Q+IH+IE+ LG +SNTASYLRLWALSLAH++LS V +  ++   L                     T+ +LL+ME LSAFLHA+RLHWVEFQNKFY G G KF PFSF+
Sbjct:  735 QVIHSIEYCLGCISNTASYLRLWALSLAHAQLSDVLWAMLMRVGLRVDTTYGVLLLLPVIALFAVLTIFILLIMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPFSFS 843          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP2_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 2 OS=Mus musculus GN=Atp6v0a2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  191 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFA 508
            Q IH+IE+ LG +SNTASYLRLWALSLAH++LS V +  ++   L                     T+ +LLVME LSAFLHA+RLHWVEFQNKFY G G KF PFSF+
Sbjct:  735 QAIHSIEYCLGCISNTASYLRLWALSLAHAQLSDVLWAMLMRVGLRVDTTYGVLLLLPVMAFFAVLTIFILLVMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPFSFS 843          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP2_BOVIN (V-type proton ATPase 116 kDa subunit a isoform 2 OS=Bos taurus GN=ATP6V0A2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  191 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            Q+IH+IE+ LG +SNTASYLRLWALSLAH++LS V +  ++   L                     T+ +LL+ME LSAFLHA+RLHWVEFQNKFY G G KF PFSF
Sbjct:  735 QIIHSIEYCLGCISNTASYLRLWALSLAHAQLSEVLWAMLMHVGLRVDTAYGVLVLLPVIAFFAVLTIFILLIMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPFSF 842          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: STV1_YEAST (V-type proton ATPase subunit a, Golgi isoform OS=Saccharomyces cerevisiae GN=STV1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2
Query:    8 AFVSVPWMLLPKPFILK-------------------MQH-----QDRHQGQSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXX---QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXX------ATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            A V VPW+LL KP  L+                   ++H     Q RH  + ++ +  +D +   D+ ++                  Q+IHTIEF L  +S+TASYLRLWALSLAH++LSSV ++  +  A+                        TV +L+ ME  SA LHALRLHWVE  +KF+EG+GY + PFSF
Sbjct:  687 ALVCVPWLLLYKPLTLRRLNKNGGGGRPHGYQSVGNIEHEEQIAQQRHSAEGFQGMIISDVASVADSINESVGGGEQGPFNFGDVMIHQVIHTIEFCLNCISHTASYLRLWALSLAHAQLSSVLWDMTISNAFSSKNSGSPLAVMKVVFLFAMWFVLTVCILVFMEGTSAMLHALRLHWVEAMSKFFEGEGYAYEPFSF 885          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPH1_YEAST (V-type proton ATPase subunit a, vacuolar isoform OS=Saccharomyces cerevisiae GN=VPH1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 69/187 (36.90%), Postives = 94/187 (50.27%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTD-----ESLQP------------DTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAW---XXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A V +PW+LL KP   K  H+ +    S+E L ST+     E L+             +                   Q+IHTIEF L  VS+TASYLRLWALSLAH++LSSV +   + +A+                     T  VL++ME  SA LH+LRLHWVE  +KF+ G+G  + PF+F
Sbjct:  640 MALVCIPWLLLVKPLHFKFTHKKK----SHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTIEFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRLHWVESMSKFFVGEGLPYEPFAF 822          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPH1_NEUCR (V-type proton ATPase subunit a OS=Neurospora crassa GN=vph-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDRHQGQSYEAL------QSTDESLQPDTN---------------HDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            LA + VP +L  KPF L+ ++ +R + + Y  +       + DE  + D +               H                Q+IHTIEF L +VS+TASYLRLWALSLAH +LS+V +   +   L +                   +V +L++ME +SA LH+LRL WVE  +KF E  G+ F+PFSF
Sbjct:  652 LAVIQVPILLFLKPFYLRWEN-NRARAKGYRGIGERSRVSALDEDDEEDPSNGDDYEGAAMLTHDEHGDGEHEEFEFGEVMIHQVIHTIEFCLNSVSHTASYLRLWALSLAHQQLSAVLWSMTMAKALESKGLGGAIFLVVAFAMFFVLSVIILIIMEGVSAMLHSLRLAWVESFSKFAEFGGWPFTPFSF 841          
The following BLAST results are available for this feature:
BLAST of CX299666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VPP1_XENLA2.423e-2942.16V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP3_HUMAN1.570e-2843.62V-type proton ATPase 116 kDa subunit a isoform 3 O... [more]
VPP1_CAEEL1.736e-2740.74Probable V-type proton ATPase 116 kDa subunit a OS... [more]
VPH1_SCHPO9.528e-2640.34V-type proton ATPase subunit a OS=Schizosaccharomy... [more]
VPP2_HUMAN1.053e-2454.13V-type proton ATPase 116 kDa subunit a isoform 2 O... [more]
VPP2_MOUSE1.376e-2455.05V-type proton ATPase 116 kDa subunit a isoform 2 O... [more]
VPP2_BOVIN1.376e-2454.63V-type proton ATPase 116 kDa subunit a isoform 2 O... [more]
STV1_YEAST4.003e-2435.68V-type proton ATPase subunit a, Golgi isoform OS=S... [more]
VPH1_YEAST4.426e-2336.90V-type proton ATPase subunit a, vacuolar isoform O... [more]
VPH1_NEUCR2.273e-1934.55V-type proton ATPase subunit a OS=Neurospora crass... [more]

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Properties
Property NameValue
Genbank descriptionC06024H05SK RindPdig24 Citrus clementina cDNA clone C06024H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299666 ID=CX299666; Name=CX299666; organism=Citrus clementina; type=EST; length=709bp
AGGGTTGGCTTTTGTTTCTGTCCCATGGATGCTGCTTCCAAAGCCTTTTA
TCTTAAAGATGCAACACCAAGACAGGCATCAAGGCCAATCTTATGAAGCA
CTCCAGAGCACAGACGAGTCTCTTCAGCCAGATACAAATCATGATTCCCA
TGGTCATGAGGAATTTGAGTTCAGTGAAGTTTTTGTACATCAGATGATAC
ACACAATTGAGTTTGTACTTGGAGCAGTTTCAAACACAGCTTCTTACCTT
CGATTATGGGCTCTGAGTCTTGCCCACTCGGAACTATCAAGTGTGTTCTA
TGAGAAGGTCCTTCTCCTTGCTTGGGGGTACAATAATATACTTATCCTTA
TTGTTGGCATCATCGTCTTCATATTTGCAACTGTGGGCGTATTGCTGGTG
ATGGAAACTCTTAGTGCTTTCTTGCATGCTTTGCGTCTTCACTGGGTGGA
ATTCCAGAACAAGTTTTACGAAGGAGACGGTTACAAGTTCTCTCCATTTT
CATTTGCATTGCTTGATGATGAAGATGAATGATACACTTGATTGAATAAA
TAGTTACCGTCCGAAGATAATTCAGTTGTGTGTGCATAGCTTTGGGATCT
GTGCTCATTTTTTTAATTTGAACATCATGGAAGAGGTTGATCGGGATGTA
TCTTGTAGAGGCCATTGGAGAAACTTTTTAGCATGCGAGCATTGACCCGT
TCCTTTTCA
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