CX299680

Overview
NameCX299680
Unique NameCX299680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:208..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_WOLSU (Fumarate reductase flavoprotein subunit OS=Wolinella succinogenes GN=frdA PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 52/153 (33.99%), Postives = 77/153 (50.33%), Query Frame = 2 
Query:  140 EHGFNTACITKLFPTRSHTVAAQGGINAALGN--MTE-DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSR-----------------TED----GKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMK 526
            + G +T  ++ +   RSH+ AAQGG+ A+LGN  M++ D+   H  DTVKGSDW  DQ   +     APKA+ EL  +G+P++R                 TE+    G I+ R FGG         + +R    AD TGH +L  +  + +K
Sbjct:   26 QKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGT--------KKWRTCYTADATGHTMLFAVANECLK 170
The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
FRDA_WOLSU2.368e-1333.99Fumarate reductase flavoprotein subunit OS=Wolinel... [more]

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Properties
Property NameValue
Genbank descriptionC07001A08SK NTLeaf1 Citrus clementina cDNA clone C07001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bp
CAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACCAATTCCA
CTGGAGGATACACAATAGTGGATCATACATATGATGCTGTAGTTGTTGGA
GCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGCATGGCTT
CAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCACACTGTTG
CGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGAAGATGAC
TGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGTTAGGTGA
TCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCAGTGATTG
AGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGGAAAAATA
TACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTGTGGAAAAGGTGGGCA
GGCGTACCGATGTGCATGTGCTGCTGACAGAACTGGTCATGCTCTATTGC
ATACCCTCTATGGCCAGGCTATGAAACATAATACA
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