CX299680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 3.703e-83 Identity = 149/176 (84.66%), Postives = 151/176 (85.80%), Query Frame = 2 Query: 17 SHFSRLFSTNST---GGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 S FSR FST ST YTIVDHTYD LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTE+GKIYQRAFGGQSLD GKGGQAYRCACAADRTGHALLHTLYGQAMKHNT Sbjct: 26 SRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 201
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 2.032e-81 Identity = 144/170 (84.71%), Postives = 150/170 (88.24%), Query Frame = 2 Query: 26 SRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 +RLFST S+ YT+VDH+YD LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD+IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLD GKGGQAYRCACAADRTGHA+LHTLYGQAMKHNT Sbjct: 29 ARLFSTASSS-YTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT 197
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 1.456e-79 Identity = 144/179 (80.45%), Postives = 148/179 (82.68%), Query Frame = 2 Query: 11 LRSHFSRLFSTNSTGG----YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 + S SR FS + G YTIVDHTYD LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+ DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSL+ G GGQAYRCACAADRTGHALLHTLYGQAMKHNT Sbjct: 21 ITSQLSRFFSAPPSAGDKSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQAYRCACAADRTGHALLHTLYGQAMKHNT 199
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 4.695e-70 Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 2 Query: 38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 ST+ + Y ++DHTYD L+E GFNTACITKLFPTRSHTVAAQGGINAALGNMT+DDWRWH YDTVKGSDWLGDQDAI YM +EAPKAV+ELE++G+PFSRT++GKIYQRAFGGQSL+ GKGGQAYRCA ADRTGH++LHTLYGQ++KHNT Sbjct: 41 STSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNT 206
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 1.414e-66 Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 2 Query: 38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 S + + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 1.414e-66 Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 2 Query: 38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 S + + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2) HSP 1 Score: 251.906 bits (642), Expect = 1.414e-66 Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 2 Query: 38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 S + + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 4.113e-66 Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 2 Query: 14 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 R S S + + Y +VDH +D LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 43 RKDTSAKLSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 216
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3) HSP 1 Score: 250.366 bits (638), Expect = 4.113e-66 Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 214
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_MOUSE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus GN=Sdha PE=1 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66 Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 55 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213 The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bpback to top |