CX300085

Overview
NameCX300085
Unique NameCX300085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.355e-25
Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = 1
Query:    1 EIMQNTIKECEDP--GIKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEV----KKGTKMQTYTIAA--GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 459
            E M+ T+ ECE    G + + K+C TSLESM++F+ + LG + ++A+STEV       T  Q YT+ A   V  ++    V CH   Y YAVF CH T  T AY V L GADGT+A+A A CH D  A+     A++ + V  G+VP+CH +P   ++WV N
Sbjct:  156 EDMRTTLAECEAALLGARDQAKHCVTSLESMVEFAAASLGTRDIRAVSTEVIGTGAAETPRQEYTVEAVKPVVSVSGGNMVTCHGMPYAYAVFGCHTTTAT-AYAVTLAGADGTRAEALATCHGD--AFPGVAEAYERVGVAAGSVPVCHIMPLGDMLWVRN 314          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.949e-25
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    4 IMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            I+ + + ECE P   GE K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      K+V CH+  YPY ++YCH+    R Y   L   +  K      A+CH DTS+W P H AF  L  KPG + +CH++ E+ + W
Sbjct:  471 IITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNW 622          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: SVF30_VICFA (Unknown seed protein 30.1 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.604e-24
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
Query:   28 CEDPGIKGEQKYCATSLESMIDFSTSKLGKS-VQAISTEVKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 459
            C  P    E K+C +SL+SMID   S  G + ++AIS+        Q   +   VK++  D +V+CH+ N+   VF CH  + T AY+V L  +DGTK KA  VCH DT   NP+ L ++ L+V  GTVP+CHF+      WVPN
Sbjct:  120 CYSPTAIAEHKHCVSSLKSMIDQVISHFGSTKIKAISSNF---APYQDQYVVEDVKKVG-DNAVMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWVPN 259          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: EA87_VICFA (Embryonic abundant protein USP87 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.604e-24
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
Query:   28 CEDPGIKGEQKYCATSLESMIDFSTSKLGKS-VQAISTEVKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 459
            C  P    E K+C +SL+SMID   S  G + ++AIS+        Q   +   VK++  D +V+CH+ N+   VF CH  + T AY+V L  +DGTK KA  VCH DT   NP+ L ++ L+V  GTVP+CHF+      WVPN
Sbjct:  120 CYSPTAIAEHKHCVSSLKSMIDQVISHFGSTKIKAISSNF---APYQDQYVVEDVKKVG-DNAVMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWVPN 259          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.400e-24
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    4 IMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            I+ + + ECE P   GE K C  S E MIDF+TS LG+ V   +TE   G+K +       G+      ++V CH+  YPY ++YCH+    R Y   L      +      A+CH DTSAW+P H AF  L   PG + +CH++ E+ + W
Sbjct:  469 IISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.400e-24
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    4 IMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            I+ + ++ECE P    E K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      KSV CH+  YPY ++YCH+    R Y   L     +KAK     A+CH DTSAW   H AF +L  +PG + +CH++ E+ + W
Sbjct:  467 IITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPK-SKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNW 618          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.688e-23
Identity = 56/149 (37.58%), Postives = 77/149 (51.68%), Query Frame = 1
Query:   13 NTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            +T+ ECE    +GE K CATS E ++DF+   LG  +   ST    G+  Q       GV      +SV CH+  +PY V+YCH+    R Y   +  AD  +      A+CH DTS W+P H AF  L  KPG V +CH++ E  + W
Sbjct:  475 STVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTW 623          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.688e-23
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    7 MQNTIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVKKGTKM--QTYTIAAGVKQMAADK--SVVCHKQNYPYAVFYCHATQTTRAYMVPLEGAD-------GT--KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 456
            +Q+ +  CE    IKGE++ CATS+ES+++F+ S LG + ++A S +V     M    Y + A V+ +A  +  +V CH   +P+AVFYCHA   TR Y V LE  +       GT  K +A AVCH DTS ++PK   F    ++PG   +CHF+  D ++W P
Sbjct:  171 IQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVA-VRTVAGLRGDTVTCHTMRFPFAVFYCHAINPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWAP 334          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.879e-23
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 1
Query:    1 EIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            +++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE  KG+       +  G+      KSV CH+  YPY ++YCH+    R Y   +   + +K K     A+CH DTS+W P H AF  L   PG + +CH++ E+ + W
Sbjct:  474 KMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPN-SKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTW 626          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.413e-23
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    1 EIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            +++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K      +  G+      KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  476 KMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628          
The following BLAST results are available for this feature:
BLAST of CX300085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
BURP8_ORYSJ2.355e-2541.98BURP domain-containing protein 8 OS=Oryza sativa s... [more]
JP650_ARATH8.949e-2538.82Probable polygalacturonase non-catalytic subunit J... [more]
SVF30_VICFA2.604e-2441.38Unknown seed protein 30.1 OS=Vicia faba PE=2 SV=1[more]
EA87_VICFA2.604e-2441.38Embryonic abundant protein USP87 OS=Vicia faba PE=... [more]
Y639_ARATH3.400e-2436.84Probable polygalacturonase non-catalytic subunit A... [more]
JP630_ARATH3.400e-2439.22Probable polygalacturonase non-catalytic subunit J... [more]
BURPC_ORYSJ1.688e-2337.58BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPA_ORYSJ1.688e-2338.79BURP domain-containing protein 10 OS=Oryza sativa ... [more]
GP1_SOLLC2.879e-2336.36Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP3_SOLLC6.413e-2336.36Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07005H06SK SaltLeaf1 Citrus clementina cDNA clone C07005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300085 ID=CX300085; Name=CX300085; organism=Citrus clementina; type=EST; length=506bp
GAAATAATGCAGAACACAATCAAAGAGTGTGAAGACCCTGGCATTAAAGG
AGAGCAGAAATATTGTGCAACTTCACTGGAGTCAATGATTGACTTCAGCA
CTTCTAAGCTTGGAAAGAGTGTTCAGGCAATTTCTACGGAGGTAAAAAAA
GGAACCAAGATGCAGACATATACAATCGCAGCTGGAGTGAAGCAGATGGC
AGCTGACAAATCAGTAGTGTGCCATAAGCAGAACTATCCATATGCTGTAT
TCTACTGCCATGCAACACAAACCACAAGGGCTTACATGGTTCCCTTGGAA
GGTGCTGATGGGACAAAAGCCAAAGCAGCAGCAGTCTGCCACACAGATAC
ATCAGCATGGAACCCCAAGCATTTAGCTTTTCAAGTGCTCAAAGTTAAGC
CAGGAACTGTTCCTATATGTCACTTCCTTCCTGAGGATCACATTGTCTGG
GTTCCCAATAAGAAGACTGGAGAATAGAATTTGATCCTCTTATCCCATCT
ACTTAA
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