CX300085

Overview
NameCX300085
Unique NameCX300085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.376e-23
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    1 EIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 450
            +++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K      +  G+      KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  473 KMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURPB_ORYSJ (BURP domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=BURP11 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.429e-22
Identity = 67/175 (38.29%), Postives = 88/175 (50.29%), Query Frame = 1
Query:   43 IKGEQKYCATSLESMIDFSTSKLG-KSVQAIS----------TEVKKG----TKMQTYTIAAGVKQMAADKS-----VVCHKQNYPYAVFYCHATQTTRAYMVPL------------EGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPNKKTG 471
            + GE+  CATSLES+ D + S LG + V+A S          T  ++G    T ++  +  AG    ++ +      V CH   YPYAVFYCH+T+ T AY V L            E A   K +A AVCH DTS W   +  F    VKPG V +CHFL +  IVWVP  + G
Sbjct:  148 LPGEKAGCATSLESLADLAASLLGTRDVRAFSAADLPTDAATTPARRGRYNVTSVRELSAMAGSGSSSSSEPAPAAVVACHDLTYPYAVFYCHSTKPTAAYAVTLVAATTGDGDGEGEAASPAKMEALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLTKLSIVWVPRHEQG 322          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.437e-22
Identity = 67/164 (40.85%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 EIMQNTIKECEDPGIKGE-----QKYCATSLESMIDFSTSKLG-KSVQAISTEVKKG---TKMQTYTI-AAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHL-AFQVLKVKPGTVPICHFLPEDHIVWVPN 459
            + M++T+  CE   I  E     + YCATSLESM++   S LG + V A+STEV      T  Q Y + A     +     V CH+  Y YAVF  H  +   AY V L GADGT A+A A CH D          A++ L V PG V +CHFLP+D ++WV N
Sbjct:  125 DAMRSTLAVCEAARIASETAPKHKHYCATSLESMVELVASSLGTRDVHAVSTEVVNRAGPTPRQAYRVEAVRPVPVPGGDMVACHRMPYAYAVFGVHGIKGA-AYTVTLAGADGTMAEAVAACHGDVDGHGVAVAEAYKRLGVAPGKVAVCHFLPQDDMLWVRN 287          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.157e-22
Identity = 56/153 (36.60%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   16 TIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVK-KGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKA---AAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 456
            T++ CE  G + GE+  CATS+ES++D   S LG K V+A++     +G     Y +A+      +   + CH   YPY VF+CH  + TR Y V L   +  +       AVCH +TS W+  H  F  + VKPG    CHF     I+WVP
Sbjct:  354 TLQACEHTGMVHGEKAKCATSIESLLDVVVSSLGTKLVRALTPGAPMEGVPSLRYIVASATPVPNSQSMLACHDMLYPYKVFFCHTPKQTRLYQVSLVSGESGRPLIDGLLAVCHQNTSDWDTGHPFFHFMDVKPGETTACHFFGRGSIIWVP 506          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.519e-21
Identity = 55/153 (35.95%), Postives = 74/153 (48.37%), Query Frame = 1
Query:    7 MQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWV 453
            +  T+ +C+    KGE K C TS E MIDF+ + LG  +   ST +  G           G+       SV CH+  +PY V+YCH+    R Y   +     TK K     A+CH DTSAWN  H AF  L  KPG   +CH++    + WV
Sbjct:  188 VDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESIMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQ-TKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.746e-20
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 1
Query:    1 EIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTE--VKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPG-----TVPICHFLPEDHIV 447
            +++ +T+ EC  P  +GE K CATS E ++DF+   LG +V A +TE     G  ++   +A         +SV CH+  +PY V+YCH+  T R Y   +   D  +      A+CH DTS W+P H AF  L  KPG     T  IC  + +   V
Sbjct:  533 QVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICHLDTSDWSPNHGAFIALGGKPGKKVDPTKFICFIMQDGEFV 690          
BLAST of CX300085 vs. ExPASy Swiss-Prot
Match: BURP4_ORYSJ (BURP domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=BURP4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.635e-18
Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   13 NTIKECED---PGIKGEQKY--CATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYTIAA-GVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGT---KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 459
            +T++ C +    G  GE+    CATS E+++DF+ S LG S     T +  G + + Y +AA GV ++  D  V CH   Y Y V+YCH      A  V L          A A AVCH +T+ W+  +  F++LK   G   ICH++P+ +++W+ N
Sbjct:  325 DTLRACSELTAAGGGGEEPRACCATSREAVLDFAASALGTSAPRAVTTLVHGREPRRYVVAADGVARIGGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAVAVCHVNTTTWDSAY--FELLKASRGDA-ICHYMPQGYVLWLAN 479          
The following BLAST results are available for this feature:
BLAST of CX300085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GP2_SOLLC8.376e-2336.36Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
BURPB_ORYSJ1.429e-2238.29BURP domain-containing protein 11 OS=Oryza sativa ... [more]
BURP2_ORYSJ2.437e-2240.85BURP domain-containing protein 2 OS=Oryza sativa s... [more]
BURP9_ORYSJ4.157e-2236.60BURP domain-containing protein 9 OS=Oryza sativa s... [more]
BURPG_ORYSJ3.519e-2135.95BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURPE_ORYSJ1.746e-2034.81BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURP4_ORYSJ1.635e-1834.18BURP domain-containing protein 4 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC07005H06SK SaltLeaf1 Citrus clementina cDNA clone C07005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300085 ID=CX300085; Name=CX300085; organism=Citrus clementina; type=EST; length=506bp
GAAATAATGCAGAACACAATCAAAGAGTGTGAAGACCCTGGCATTAAAGG
AGAGCAGAAATATTGTGCAACTTCACTGGAGTCAATGATTGACTTCAGCA
CTTCTAAGCTTGGAAAGAGTGTTCAGGCAATTTCTACGGAGGTAAAAAAA
GGAACCAAGATGCAGACATATACAATCGCAGCTGGAGTGAAGCAGATGGC
AGCTGACAAATCAGTAGTGTGCCATAAGCAGAACTATCCATATGCTGTAT
TCTACTGCCATGCAACACAAACCACAAGGGCTTACATGGTTCCCTTGGAA
GGTGCTGATGGGACAAAAGCCAAAGCAGCAGCAGTCTGCCACACAGATAC
ATCAGCATGGAACCCCAAGCATTTAGCTTTTCAAGTGCTCAAAGTTAAGC
CAGGAACTGTTCCTATATGTCACTTCCTTCCTGAGGATCACATTGTCTGG
GTTCCCAATAAGAAGACTGGAGAATAGAATTTGATCCTCTTATCCCATCT
ACTTAA
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