CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_BACFN (Biosynthetic arginine decarboxylase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=speA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIG--------ASDPVR--------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMF 377
            A Q+++  ++ F  G + ++  A ++ L   + +EI         A D  R         Y  N S+F S+PD WAI Q+FPI+PI  LDE+P     L D+TCDSDGKI  FI   T    H M      ++ PYY+ +F
Sbjct:  396 AQQIREEALDLFSHGIVDLKTRAQIERLYWSITREINQIAGGLKHAPDEFRGLSKLLADKYFCNFSLFQSLPDSWAIDQIFPIMPIQRLDEKPDRSATLQDITCDSDGKIANFI--STRNVAHYMPVHSLKQKEPYYVAVF 534          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROM5 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9515) GN=speA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 53/144 (36.81%), Postives = 73/144 (50.69%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGA----------------SDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            A + K+ C+  F+ G + + + A  + L    AKEI +                     TY+ NLS+F SIPD WAI Q+FPI+PIH   E P  +G  +DLTCDSDGK++ FI  G   + L LH        E   Y +G+F
Sbjct:  412 AKKFKKDCLVAFRLGFISLGERAYAEELTWACAKEISSHLDNEKIIHPDLSEITETLSSTYYANLSVFKSIPDTWAINQIFPIIPIHRHLEEPICKGNFADLTCDSDGKLNNFIDNGKIKSLLNLHRP-----EENNDYLIGIF 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PELPD (Biosynthetic arginine decarboxylase OS=Pelobacter propionicus (strain DSM 2379) GN=speA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.066e-16
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIG----ASDPV------------RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGTS-LPLHEMVGGGCGERGPYYLGMF 377
            QL Q  +  F  G L +   A  + L   + K+I        PV            +TY  N S+F SIPD WAI QLFPI+PI  L E+P V   ++D+TCDSDG+I  F+G  G T  LPLH++      +   YY+G F
Sbjct:  401 QLIQEAVSLFNLGYLNLNDRAMAEWLYTRIIKKINNLVEKMKPVPEELQNFKLSMRQTYFANFSLFQSIPDSWAIDQLFPIMPIQRLGEKPDVIASIADITCDSDGEITSFVGENGRTKYLPLHKI-----RKNEEYYIGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOSF (Biosynthetic arginine decarboxylase OS=Geobacter sp. (strain FRC-32) GN=speA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.066e-16
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGAS----DPV------------RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGTS-LPLHEMVGGGCGERGPYYLGMF 377
            QL Q  +  F  G L + + A  + L   + K+I +      P+            +TY  N S+F SIPD WAI QLFPIVPI  L+++P V   ++D+TCDSDG+I  F+G  G T  LPLH++      +   YY+G F
Sbjct:  401 QLIQEAVSLFNLGYLTLNERAMAEWLYGKIIKKINSIVEKIKPIPEELQNFQLALRQTYFANFSLFQSIPDSWAIDQLFPIVPIQRLNQKPDVIASIADITCDSDGEITSFVGENGRTKFLPLHKI-----RKDEDYYIGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PSEPK (Biosynthetic arginine decarboxylase OS=Pseudomonas putida (strain KT2440) GN=speA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            Y  N S+F S+PD WAIGQ+ PI+P+H LDE P  R VL DLTCDSDGKI++++      TS+P+H +  G       Y LG+F
Sbjct:  465 YICNFSVFQSLPDTWAIGQVLPIIPLHRLDEEPMRRAVLQDLTCDSDGKINQYVDEQSIETSMPVHAVKEG-----EDYLLGVF 543          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_BACTN (Biosynthetic arginine decarboxylase OS=Bacteroides thetaiotaomicron GN=speA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIG--------ASDPVR--------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            A Q+++  ++ F  G + ++  A ++ L   + +EI         A D  R         Y  N S+F S+PD WAI Q+FPI+PI  LDE+P     L D+TCDSDGKI  FI        LP+H +      +  PYYL +F
Sbjct:  396 AQQIREEALDLFSHGIVDLKTRAQIERLYWSITREINQIAGGLKHAPDEFRGLSKLLADKYFCNFSLFQSLPDSWAIDQIFPIMPIQRLDEKPERSATLQDITCDSDGKIANFISTRNVAHYLPVHSL-----KKTEPYYLAVF 534          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PSESM (Biosynthetic arginine decarboxylase OS=Pseudomonas syringae pv. tomato GN=speA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            Y  N S+F S+PD WAIGQ+ PI+P+H LDE P  R VL DLTCDSDGKI +++      TS+P+H +      E   Y LG+F
Sbjct:  465 YICNFSVFQSLPDTWAIGQVLPILPLHRLDEEPVRRAVLQDLTCDSDGKIKQYVDEQSIETSMPVHSL-----NEGEDYLLGIF 543          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOSL (Biosynthetic arginine decarboxylase OS=Geobacter sulfurreducens GN=speA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16
Identity = 53/142 (37.32%), Postives = 76/142 (53.52%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEI-GASDPVR---------------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGTS-LPLHEMVGGGCGERGPYYLGMF 377
            QL Q  +  F  G L + + A  + L   + ++I G  + ++               TY  N S+F SIPD WAI QLFPIVPI  L+++P V   ++D+TCDSDG+I  F+G  G T  LPLH+M      +   Y++G F
Sbjct:  401 QLIQEAVSLFNLGYLTLNERAMAEWLHGKILRKINGIVEKIKPIPEELQNFQLSLRQTYFANFSLFQSIPDSWAIDQLFPIVPIQRLNQKPDVMASIADITCDSDGEITSFVGENGRTKYLPLHKM-----RKDEDYFVGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_DEIRA (Biosynthetic arginine decarboxylase OS=Deinococcus radiodurans GN=speA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:  144 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMF 377
            N S+F S+PD WAIG LFPIVP+  L+E+P  +  L D+TCDSDGK++KFI       +LPLHE      G+R PYYLG F
Sbjct:  488 NFSLFQSLPDNWAIGALFPIVPLDRLNEQPTRQATLVDITCDSDGKVEKFIDLRDVKATLPLHEP-----GDR-PYYLGAF 562          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_XANAC (Biosynthetic arginine decarboxylase OS=Xanthomonas axonopodis pv. citri GN=speA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            V  Y VN S+F SIPD WAI Q+FPIVPI  L+E P  RG+++D+TCDSDG +  ++      +SLPLH +  G     G + +G +
Sbjct:  450 VDKYFVNFSVFESIPDVWAIDQVFPIVPIERLNEAPQRRGIIADMTCDSDGMVKTYVENESLDSSLPLHRLNAGESYRIGFFLVGAY 536          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_BACFN9.274e-1735.46Biosynthetic arginine decarboxylase OS=Bacteroides... [more]
SPEA_PROM51.582e-1636.81Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PELPD2.066e-1638.73Biosynthetic arginine decarboxylase OS=Pelobacter ... [more]
SPEA_GEOSF2.066e-1638.03Biosynthetic arginine decarboxylase OS=Geobacter s... [more]
SPEA_PSEPK2.698e-1650.00Biosynthetic arginine decarboxylase OS=Pseudomonas... [more]
SPEA_BACTN2.698e-1635.42Biosynthetic arginine decarboxylase OS=Bacteroides... [more]
SPEA_PSESM3.524e-1650.00Biosynthetic arginine decarboxylase OS=Pseudomonas... [more]
SPEA_GEOSL4.603e-1637.32Biosynthetic arginine decarboxylase OS=Geobacter s... [more]
SPEA_DEIRA4.603e-1654.32Biosynthetic arginine decarboxylase OS=Deinococcus... [more]
SPEA_XANAC6.011e-1645.98Biosynthetic arginine decarboxylase OS=Xanthomonas... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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