CX300194
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_HAMD5 (Biosynthetic arginine decarboxylase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=speA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13 Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 33 QFKDGTLGIEQLATVDGL----CDFVAKEIGASDPVRT-------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302 Q+ G L ++Q A + L C + KE+ SD +VN S+F S+PD W I QLFPI+P+ L++RP R VL D+TCDSDG I+ ++ G Sbjct: 409 QYTHGILDLKQRAWAEQLYLQICHHIQKELDPSDRAHRTMIDNLQERMADKLYVNFSLFQSLPDAWGINQLFPILPLEGLNQRPERRAVLLDITCDSDGIIEHYVDG 515
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEHH (Biosynthetic arginine decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=speA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG ID+++ G T+LP+ + PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTIDQYVDGQGIETTLPVPAWT-----QESPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_CHRVO (Biosynthetic arginine decarboxylase OS=Chromobacterium violaceum GN=speA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGG 338 Y N S+F S+PD WAI Q+ PI+P+H L E+P R VL DLTCDSDGK+ +++ +S+ +HE+ G Sbjct: 454 YFCNFSVFQSLPDTWAIDQVLPIMPVHRLAEQPTRRAVLQDLTCDSDGKLKQYVDQQSIESSMSVHEVKQG 524
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPA (Biosynthetic arginine decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=speA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ + PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTVDQYVEGQGIETTLPVPAWT-----QESPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHELP (Biosynthetic arginine decarboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=speA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD++P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKKPERRAVMLDITCDSDGTVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHIFL (Biosynthetic arginine decarboxylase OS=Shigella flexneri GN=speA PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 +VN S+F S+PD W I QLFP++P+ LD+ P R VL D+TCDSDG ID +I G T++P+ E Sbjct: 486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHIF8 (Biosynthetic arginine decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=speA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 +VN S+F S+PD W I QLFP++P+ LD+ P R VL D+TCDSDG ID +I G T++P+ E Sbjct: 460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEWM (Biosynthetic arginine decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=speA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FPI+P+ LD+ P R V+ D+TCDSDG ID+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALTY (Biosynthetic arginine decarboxylase OS=Salmonella typhimurium GN=speA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 +VN S+F S+PD W I QLFP++P+ LD+ P R VL D+TCDSDG ID +I G T++P+ E Sbjct: 486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALTI (Biosynthetic arginine decarboxylase OS=Salmonella typhi GN=speA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 +VN S+F S+PD W I QLFP++P+ LD+ P R VL D+TCDSDG ID +I G T++P+ E Sbjct: 486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551 The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bpback to top |