CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_HAMD5 (Biosynthetic arginine decarboxylase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=speA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 3
Query:   33 QFKDGTLGIEQLATVDGL----CDFVAKEIGASDPVRT-------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302
            Q+  G L ++Q A  + L    C  + KE+  SD                  +VN S+F S+PD W I QLFPI+P+  L++RP  R VL D+TCDSDG I+ ++ G
Sbjct:  409 QYTHGILDLKQRAWAEQLYLQICHHIQKELDPSDRAHRTMIDNLQERMADKLYVNFSLFQSLPDAWGINQLFPILPLEGLNQRPERRAVLLDITCDSDGIIEHYVDG 515          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEHH (Biosynthetic arginine decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=speA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+         +  PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTIDQYVDGQGIETTLPVPAWT-----QESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_CHRVO (Biosynthetic arginine decarboxylase OS=Chromobacterium violaceum GN=speA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGG 338
            Y  N S+F S+PD WAI Q+ PI+P+H L E+P  R VL DLTCDSDGK+ +++      +S+ +HE+  G
Sbjct:  454 YFCNFSVFQSLPDTWAIDQVLPIMPVHRLAEQPTRRAVLQDLTCDSDGKLKQYVDQQSIESSMSVHEVKQG 524          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPA (Biosynthetic arginine decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=speA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+         +  PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTVDQYVEGQGIETTLPVPAWT-----QESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHELP (Biosynthetic arginine decarboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=speA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD++P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKKPERRAVMLDITCDSDGTVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHIFL (Biosynthetic arginine decarboxylase OS=Shigella flexneri GN=speA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHIF8 (Biosynthetic arginine decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEWM (Biosynthetic arginine decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALTY (Biosynthetic arginine decarboxylase OS=Salmonella typhimurium GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALTI (Biosynthetic arginine decarboxylase OS=Salmonella typhi GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_HAMD51.253e-1338.32Biosynthetic arginine decarboxylase OS=Hamiltonell... [more]
SPEA_SHEHH2.138e-1341.67Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_CHRVO2.792e-1347.89Biosynthetic arginine decarboxylase OS=Chromobacte... [more]
SPEA_SHEPA3.647e-1340.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHELP3.647e-1340.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHIFL4.763e-1351.52Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHIF84.763e-1351.52Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHEWM4.763e-1342.86Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SALTY4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALTI4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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