CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALSV (Biosynthetic arginine decarboxylase OS=Salmonella schwarzengrund (strain CVM19633) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALPB (Biosynthetic arginine decarboxylase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALNS (Biosynthetic arginine decarboxylase OS=Salmonella newport (strain SL254) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALHS (Biosynthetic arginine decarboxylase OS=Salmonella heidelberg (strain SL476) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALDC (Biosynthetic arginine decarboxylase OS=Salmonella dublin (strain CT_02021853) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALCH (Biosynthetic arginine decarboxylase OS=Salmonella choleraesuis GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SALA4 (Biosynthetic arginine decarboxylase OS=Salmonella agona (strain SL483) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_ECOSM (Biosynthetic arginine decarboxylase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_ECOLI (Biosynthetic arginine decarboxylase OS=Escherichia coli (strain K12) GN=speA PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551
[Close]
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_ECOL6 (Biosynthetic arginine decarboxylase OS=Escherichia coli O6 GN=speA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_SALSV4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALPB4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALNS4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALHS4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALDC4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALCH4.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALA44.763e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_ECOSM4.763e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECOLI4.763e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECOL64.763e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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