CX300194
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPC (Biosynthetic arginine decarboxylase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=speA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEON (Biosynthetic arginine decarboxylase OS=Shewanella oneidensis GN=speA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_KLEP3 (Biosynthetic arginine decarboxylase OS=Klebsiella pneumoniae (strain 342) GN=speA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3 Query: 36 FKDGTLGIEQLATVDGL----CDFVAKEIGASDPVRT-------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 + GT +++ A + L C V K++ S+ +VN S+F S+PD W I QLFP++P+ L++ P R VL D+TCDSDG ID ++ G T++P+ E Sbjct: 409 YSSGTFNLQERAWAEQLYLNMCHEVQKQLDPSNRAHRPIIDELQERMADKIYVNFSLFQSMPDAWGIDQLFPVMPLEGLNKSPERRAVLLDITCDSDGAIDHYVDGDGIATTMPMPE 525
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEFN (Biosynthetic arginine decarboxylase OS=Shewanella frigidimarina (strain NCIMB 400) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB9 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS195) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB8 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS185) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB5 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB2 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS223) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEAM (Biosynthetic arginine decarboxylase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKVPERRAVMLDITCDSDGIVDQYVDGQGIETTLPVPNW-----SAEDPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_MARAV (Biosynthetic arginine decarboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 VN S+F S+PD W I Q+FP++PI+ L+ R V+ D+TCDSDG+ID+++ G T+LPL E Sbjct: 466 VNFSLFQSLPDVWGIDQIFPVMPINGLNRSLNRRAVIQDITCDSDGRIDQYVDGQGIETTLPLPE 530 The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bpback to top |