CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPC (Biosynthetic arginine decarboxylase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEON (Biosynthetic arginine decarboxylase OS=Shewanella oneidensis GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_KLEP3 (Biosynthetic arginine decarboxylase OS=Klebsiella pneumoniae (strain 342) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   36 FKDGTLGIEQLATVDGL----CDFVAKEIGASDPVRT-------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +  GT  +++ A  + L    C  V K++  S+                  +VN S+F S+PD W I QLFP++P+  L++ P  R VL D+TCDSDG ID ++ G    T++P+ E
Sbjct:  409 YSSGTFNLQERAWAEQLYLNMCHEVQKQLDPSNRAHRPIIDELQERMADKIYVNFSLFQSMPDAWGIDQLFPVMPLEGLNKSPERRAVLLDITCDSDGAIDHYVDGDGIATTMPMPE 525          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEFN (Biosynthetic arginine decarboxylase OS=Shewanella frigidimarina (strain NCIMB 400) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB9 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS195) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB8 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS185) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB5 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEB2 (Biosynthetic arginine decarboxylase OS=Shewanella baltica (strain OS223) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSADSPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEAM (Biosynthetic arginine decarboxylase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKVPERRAVMLDITCDSDGIVDQYVDGQGIETTLPVPNW-----SAEDPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_MARAV (Biosynthetic arginine decarboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            VN S+F S+PD W I Q+FP++PI+ L+     R V+ D+TCDSDG+ID+++ G    T+LPL E
Sbjct:  466 VNFSLFQSLPDVWGIDQIFPVMPINGLNRSLNRRAVIQDITCDSDGRIDQYVDGQGIETTLPLPE 530          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_SHEPC1.386e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEON1.386e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_KLEP31.386e-1234.19Biosynthetic arginine decarboxylase OS=Klebsiella ... [more]
SPEA_SHEFN2.364e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEB92.364e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEB82.364e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEB52.364e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEB22.364e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEAM2.364e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_MARAV2.364e-1249.23Biosynthetic arginine decarboxylase OS=Marinobacte... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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