CX300270

Overview
NameCX300270
Unique NameCX300270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRRC7_RAT (Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356
            L+ L  L +  N++  LP TIGNL+ L+E D S NELES+   + +  SL+ L V  NF  L  LPR IG+ + +  + +  +++  LP+    + +LRV    +  L+  P    KL
Sbjct:  280 LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKL 395          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRRC7_MOUSE (Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356
            L+ L  L +  N++  LP TIGNL+ L+E D S NELES+   + +  SL+ L V  NF  L  LPR IG+ + +  + +  +++  LP+    + +LRV    +  L+  P    KL
Sbjct:  275 LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKL 390          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH3_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L++L    N++  LP  IG+L  L ELDVS NE+++I   +    +L+ LNV  N   L  LP  +  L ++ +LD S ++I  +P  +R L  L+    D  PL+ PP Q+   G   + +++
Sbjct:  152 LKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRN--HLVHLPEELAELPLI-RLDFSCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQICIKGKVHIFKYL 272          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROGR (Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350
            L+ LEIL L  N +K +P TIGNL KL+ LD+  N +E +   +     L++L +  N   +  LPRS+G+L  L  L +S++ ++ LP+    L  L     ++ P LE  P ++A
Sbjct:  465 LQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTN--QITMLPRSVGHLSNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELA 579          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROME (Leucine-rich repeat protein soc-2 homolog OS=Drosophila melanogaster GN=Sur-8 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350
            L+ LEIL L  N +K +P TIGNL KL+ LD+  N +E +   +     L++L +  N   +  LPRSIG+L  L  L +S++ ++ LP+    L  L     ++ P LE  P ++A
Sbjct:  484 LQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTN--QITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELA 598          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROAN (Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350
            L+ LEIL L  N +K +P TIGNL +L+ LD+  N +E++   +     L++L +  N   +  LPRSIG+L  L  L +S++ ++ LP+    L  L     ++ P LE  P ++A
Sbjct:  484 LQNLEILILSNNMLKKIPNTIGNLRRLRILDLEENRIETLPHEIGLLHELQRLILQTN--QITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELA 598          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRC40_XENLA (Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356
            L  L +L +H N+I  LP  I  LT L++L++S N+++ +   L    +LK   + +N   L  LP SIG+L +LE+LD+S++ +R +  S   L+ L  F      L   P ++ K+
Sbjct:  104 LPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHLQNLKSFLLQHN--QLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLTALPTEIGKM 219          

HSP 2 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRDAKSQ 419
            +E LE L L  N++  LP  +  LTKLKEL V  N+++++  E+L    SL  L +  N   L+ LP+ I  L+ LE+LD+S++ I  LPD+   L  L+  + D  PL    R +   G Q +++++   V   D  +Q
Sbjct:  242 MESLEQLYLRQNKLTYLPE-LPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYN--KLKVLPKEISLLKGLERLDLSNNDIGSLPDTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQ 378          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH3_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Mus musculus GN=Lrch3 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 38/124 (30.65%), Postives = 68/124 (54.84%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L++L    N++  LP  IG+L  L +LDVS NE++++   +    +L+  NV  N   L  LP  +  + ++ +LD S ++I ++P  +R L  L+V   D  PL+ PP Q+   G   + +++
Sbjct:  152 LKVLIASNNKLVSLPEEIGHLRHLTKLDVSCNEIQTVPSQIGNLEALRDFNVRRN--HLLRLPEELAEVPLI-RLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKYL 272          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROPS (Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350
            L+ LEIL L  N +K +P TIGN+ KL+ LD+  N +E +   +     L++L +  N   +  LPRSIG+L  L  L +S++ ++ LP+    L  L     ++ P LE  P ++A
Sbjct:  472 LQNLEILILSNNMLKKIPNTIGNMRKLRILDLEENRIEVLPHEIGLLHELQRLILQTN--QITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLEGLENLYINQNPGLEKLPFELA 586          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_CHICK (Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPD 272
            L  LE+L L  N +K LP  IGNL KL+ELD+  N+LES+   + +   L+KL + NN   L  LPR IG+L  L  L + ++ +  LP+
Sbjct:  424 LVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNN--QLTTLPRGIGHLTNLTHLGLGENLLTHLPE 511          
The following BLAST results are available for this feature:
BLAST of CX300270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LRRC7_RAT2.826e-1134.75Leucine-rich repeat-containing protein 7 OS=Rattus... [more]
LRRC7_MOUSE2.826e-1134.75Leucine-rich repeat-containing protein 7 OS=Mus mu... [more]
LRCH3_HUMAN2.826e-1133.06Leucine-rich repeat and calponin homology domain-c... [more]
SUR8_DROGR3.690e-1135.04Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
SUR8_DROME4.820e-1135.90Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
SUR8_DROAN4.820e-1135.04Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
LRC40_XENLA4.820e-1133.05Leucine-rich repeat-containing protein 40 OS=Xenop... [more]
LRCH3_MOUSE6.295e-1130.65Leucine-rich repeat and calponin homology domain-c... [more]
SUR8_DROPS8.221e-1135.04Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
SHOC2_CHICK8.221e-1142.22Leucine-rich repeat protein SHOC-2 OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionC07008B09SK NTLeaf1 Citrus clementina cDNA clone C07008B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300270 ID=CX300270; Name=CX300270; organism=Citrus clementina; type=EST; length=439bp
AGCTCGAGTGCTTGGAGATTCTTACTTTGCATTATAATAGAATAAAAGGG
TTACCGACAACTATAGGTAACCTTACCAAGTTAAAGGAGCTTGATGTAAG
CTTCAATGAGCTTGAGTCAATCACCGAGAACCTGTGCTTTGCGGTAAGTC
TCAAGAAATTGAATGTAGGGAACAACTTTGCTGATCTTAGAGCCTTGCCA
AGGTCAATTGGAAATCTTGAGATGCTGGAACAGTTGGACATAAGTGATGA
TCAAATAAGGATTTTACCAGATTCTTTCAGGTTGTTGTCAAAATTGAGAG
TTTTTCGCACCGATGAGACTCCTTTAGAAGTTCCACCAAGGCAAGTTGCT
AAATTGGGTGCTCAGGCTGTTGTCCAGTTCATGGTAGATCTTGTTGCTAA
TAGGGATGCTAAATCTCAACCAGTAGACGAGGAGAAGAA
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