CX300270
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRRC7_RAT (Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11 Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356 L+ L L + N++ LP TIGNL+ L+E D S NELES+ + + SL+ L V NF L LPR IG+ + + + + +++ LP+ + +LRV + L+ P KL Sbjct: 280 LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKL 395
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRRC7_MOUSE (Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11 Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356 L+ L L + N++ LP TIGNL+ L+E D S NELES+ + + SL+ L V NF L LPR IG+ + + + + +++ LP+ + +LRV + L+ P KL Sbjct: 275 LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKL 390
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH3_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11 Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L++L N++ LP IG+L L ELDVS NE+++I + +L+ LNV N L LP + L ++ +LD S ++I +P +R L L+ D PL+ PP Q+ G + +++ Sbjct: 152 LKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRN--HLVHLPEELAELPLI-RLDFSCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQICIKGKVHIFKYL 272
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROGR (Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11 Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350 L+ LEIL L N +K +P TIGNL KL+ LD+ N +E + + L++L + N + LPRS+G+L L L +S++ ++ LP+ L L ++ P LE P ++A Sbjct: 465 LQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTN--QITMLPRSVGHLSNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELA 579
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROME (Leucine-rich repeat protein soc-2 homolog OS=Drosophila melanogaster GN=Sur-8 PE=2 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11 Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350 L+ LEIL L N +K +P TIGNL KL+ LD+ N +E + + L++L + N + LPRSIG+L L L +S++ ++ LP+ L L ++ P LE P ++A Sbjct: 484 LQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTN--QITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELA 598
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROAN (Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11 Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350 L+ LEIL L N +K +P TIGNL +L+ LD+ N +E++ + L++L + N + LPRSIG+L L L +S++ ++ LP+ L L ++ P LE P ++A Sbjct: 484 LQNLEILILSNNMLKKIPNTIGNLRRLRILDLEENRIETLPHEIGLLHELQRLILQTN--QITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELA 598
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRC40_XENLA (Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11 Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356 L L +L +H N+I LP I LT L++L++S N+++ + L +LK + +N L LP SIG+L +LE+LD+S++ +R + S L+ L F L P ++ K+ Sbjct: 104 LPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHLQNLKSFLLQHN--QLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLTALPTEIGKM 219 HSP 2 Score: 65.855 bits (159), Expect = 8.221e-11 Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRDAKSQ 419 +E LE L L N++ LP + LTKLKEL V N+++++ E+L SL L + N L+ LP+ I L+ LE+LD+S++ I LPD+ L L+ + D PL R + G Q +++++ V D +Q Sbjct: 242 MESLEQLYLRQNKLTYLPE-LPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYN--KLKVLPKEISLLKGLERLDLSNNDIGSLPDTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQ 378
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH3_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Mus musculus GN=Lrch3 PE=2 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11 Identity = 38/124 (30.65%), Postives = 68/124 (54.84%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L++L N++ LP IG+L L +LDVS NE++++ + +L+ NV N L LP + + ++ +LD S ++I ++P +R L L+V D PL+ PP Q+ G + +++ Sbjct: 152 LKVLIASNNKLVSLPEEIGHLRHLTKLDVSCNEIQTVPSQIGNLEALRDFNVRRN--HLLRLPEELAEVPLI-RLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKYL 272
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SUR8_DROPS (Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11 Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETP-LEVPPRQVA 350 L+ LEIL L N +K +P TIGN+ KL+ LD+ N +E + + L++L + N + LPRSIG+L L L +S++ ++ LP+ L L ++ P LE P ++A Sbjct: 472 LQNLEILILSNNMLKKIPNTIGNMRKLRILDLEENRIEVLPHEIGLLHELQRLILQTN--QITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLEGLENLYINQNPGLEKLPFELA 586
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_CHICK (Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPD 272 L LE+L L N +K LP IGNL KL+ELD+ N+LES+ + + L+KL + NN L LPR IG+L L L + ++ + LP+ Sbjct: 424 LVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNN--QLTTLPRGIGHLTNLTHLGLGENLLTHLPE 511 The following BLAST results are available for this feature:
BLAST of CX300270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300270 ID=CX300270; Name=CX300270; organism=Citrus clementina; type=EST; length=439bpback to top |