CX300270
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH4_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 3.225e-15 Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L +L + N++ LP IG L L++LDVS NEL+S+ LC SL+ LNV N L LP +G+L ++ +LD S +++ +P SF L L+V D PL+ PP QV G + +++ Sbjct: 138 LRVLIVSNNKLGALPPDIGTLGSLRQLDVSSNELQSLPSELCGLSSLRDLNVRRN--QLSTLPEELGDLPLV-RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYL 258
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH4_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Mus musculus GN=Lrch4 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.730e-14 Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRDA 410 L +L + N++ LP I L L++LDVS NEL+S+ LC SL+ LNV N L LP +G+L ++ +LD S ++I +P SF L L+V D PL+ PP Q+ G + +++ R A Sbjct: 138 LRVLIISNNKLGALPPDISTLGSLRQLDVSSNELQSLPVELCSLRSLRDLNVRRN--QLSTLPDELGDLPLV-RLDFSCNRISRIPVSFCRLRHLQVVLLDSNPLQSPPAQICLKGKLHIFKYLTMEAGRRGA 267
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: MFHA1_XENTR (Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.657e-14 Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQF 380 L +L L N+ +PT + +L +L ELD+S+N L +TE + LKKL + +N LR LPR +G L LE+LD+S +QI LPD+ + L LR D L P+Q+ + A + F Sbjct: 80 LHVLILRRNKFLNVPTAVYHLGRLTELDISYNRLSCLTEAVGLLGKLKKLCLSHN--QLRTLPRQLGMLVDLEELDVSFNQITHLPDTMQGLPSLRTLDLDHNELCSFPQQLFHVPALEELDF 200 HSP 2 Score: 68.1662 bits (165), Expect = 1.656e-11 Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRDA 410 L+ L++L + N + P + L L+EL +S N L + E + L L + NN +R LP SI L LE+L + +QI ILPD F LSK+ +++ + PL PP +V G + + +L ++ A Sbjct: 262 LQKLKMLNVSSNAFQDFPVPLLQLVDLEELYMSRNRLVVLPEVISCMTKLVTLWLDNN--RIRYLPDSIVELSFLEELVLQGNQIAILPDDFGKLSKVNIWKIKDNPLIQPPYEVCMKGISYIAAYQKELAHSQPA 395
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH2_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Mus musculus GN=Lrch2 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 4.657e-14 Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM-VDLVANRDAKSQPVD 428 L++L + N++ +P IG L L ELDVS NE++ + + + SLK+LN+ N +L LP +G+L ++ +LD S +++ +P +R L L+V D PL+VPP Q+ G + +++ + D K +D Sbjct: 189 LKVLVVSNNKLVSIPEEIGKLKDLMELDVSCNEIQVLPQQMGKLHSLKELNIRRN--NLHVLPDELGDLPLV-KLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLD 325
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_DANRE (Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 6.083e-14 Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L LE+LTL N +K LP IGNL KL+ELD+ N+LES+ + + L+KL + NN L+ LP IG LE LE L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 403 LVSLEMLTLSNNLLKKLPYGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTYLGLGENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 551 HSP 2 Score: 67.3958 bits (163), Expect = 2.826e-11 Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356 L L + N++ LP G T + EL+++ N+L I E++C VSL+ L + NN L+ LP IGNL L +LD+ ++++ LP+ L L+ L PR + L Sbjct: 360 LSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNL--LKKLPYGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHL 472
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRSM1_HUMAN (E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.944e-14 Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L +++L LH N++ LP +G LT L+ L+V N+L + ++ L+ LNV +N L+ LP ++G L L L+IS ++I+ LP + L + D + + PPR+V G A++QF+ Sbjct: 80 LATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDN--KLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFL 204
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: Y0138_DICDI (Probable serine/threonine-protein kinase DDB_G0278509 OS=Dictyostelium discoideum GN=DDB_G0278509 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.038e-13 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPL 326 L L LT+ N+IK LP I NL+ L EL+ S N +E + +++C+ +LKKLN+ NN +L+ LP +IG L L L + ++QI LP SF +R TD PL Sbjct: 617 LSRLAKLTISNNKIKQLPFAINNLSSLIELNASNNVIELLPDSICYLSNLKKLNLNNN--NLKELPSNIGFLTKLVDLQLYNNQISSLPISFLKCRSIREIGTDGNPL 722
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH2_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Homo sapiens GN=LRCH2 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13 Identity = 43/140 (30.71%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM-VDLVANRDAKSQPVD 428 L++L + N++ +P IG L L ELD+S NE++ + + + SL++LN+ N +L LP +G+L ++ +LD S +++ +P +R L L+V D PL+VPP Q+ G + +++ + D K +D Sbjct: 181 LKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRN--NLHVLPDELGDLPLV-KLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLD 317
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: PATS1_DICDI (Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum GN=pats1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13 Identity = 47/157 (29.94%), Postives = 80/157 (50.96%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRD 407 L+ LE L L +N + LP + LT L+EL +SFN + + +CF ++LKKL + N L +LP SIG L L L+++++ Q+ L + LLS L + D T L+ PP ++ LG ++++ ++ DL+ ++ Sbjct: 1562 LKSLEKLYLDFNSLVTLPHSFRQLTNLEELSLSFNSMTELPREVCFLINLKKLMIEGNQIQFLPNEISQLSKLMILNVCKNKLDSLPASIGQLSQLVSLNLNNNSQLVSLRPTMGLLSNLVELKLDGTRLKTPPPEIVSLGLKSILLYLKDLIKGQE 1718
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.311e-13 Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L LE+L L N +K LP +GNL KL+ELD+ N+LES+ + + L+KL + NN L LP IG LE LE+L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLSTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572 The following BLAST results are available for this feature:
BLAST of CX300270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300270 ID=CX300270; Name=CX300270; organism=Citrus clementina; type=EST; length=439bpback to top |