CX300491

Overview
NameCX300491
Unique NameCX300491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.693e-19
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 340
            EGIVPGGG AL++ +  +  +K   E+ D+  G DIV+KA+VAP   IA NA              +  + G+NA TD YE++++AGVIDP KV R ALQ+AASVAG+++TT+A
Sbjct:  409 EGIVPGGGTALLYATKVLEGLKG--ENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVIDPTKVVRVALQDAASVAGLLITTEA 520          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG  L+ L+  V AIK  L++ +E++GADIV++AL  P  LIA NA            +++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  463 EGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG  L+ L+  V AIK  L++ +E++GADIV++AL  P  LIA NA            +++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  463 EGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 52/114 (45.61%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG  L HL+  +          +E  GA IV +AL AP   IA NA               +  GY+A  +++ NM  AG++DPAKVTR ALQNAAS+A MVLTT+ I
Sbjct:  407 EGIVPGGGTTLAHLAPQLEEWATANLSGEELTGAQIVARALTAPLKRIAENAGLNGAVISERVKELPFDEGYDASNNQFVNMFTAGIVDPAKVTRSALQNAASIAAMVLTTECI 520          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG AL+   D +P++++   D DE  G  IV++AL  P   +AHN+                  G+NA+ + Y NML AGV+DP KVTR AL+NA S+A M LTT+A+
Sbjct:  407 EGIVAGGGTALI---DVLPSLEEVQADGDESTGVSIVRRALEEPVRQLAHNSGAEGSIVAEQVKQKGTNIGFNALENDYTNMLDAGVVDPKKVTRSALENAGSIAAMFLTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA              +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+
Sbjct:  407 EGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA              +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+
Sbjct:  407 EGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACLS (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG ALV+    + A+    E+ D + G +IV++AL  P   IA NA            + +  TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+
Sbjct:  407 EGIVSGGGTALVNA---IAALDKLSEEGDIQTGINIVRRALEEPVRQIAANAGYEGSVIIDKLRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACLM (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG ALV+    + A+    E+ D + G +IV++AL  P   IA NA            + +  TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+
Sbjct:  407 EGIVSGGGTALVNA---IAALDKLSEEGDIQTGINIVRRALEEPVRQIAANAGYEGSVIIDKLRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EG+V GGG  L+   D +PA+ +   + DE  G DIV+KAL AP  LIA NA            + +   G++A   ++ NM+++G++DPAKVTR ALQNAAS A M+LTT+ +
Sbjct:  408 EGLVAGGGTTLI---DAIPALDELNLEGDEATGVDIVRKALEAPVRLIADNAGYEGSVIVEKVKSEDKGIGFDAYNGEFVNMIESGIVDPAKVTRSALQNAASAAAMLLTTECL 518          
The following BLAST results are available for this feature:
BLAST of CX300491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ERYLH1.693e-1947.3760 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]
RUBB_BRANA2.211e-1945.22RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH2.211e-1945.22RuBisCO large subunit-binding protein subunit beta... [more]
CH60_SYNE72.211e-1945.6160 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH60_NATTJ2.211e-1943.8660 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH60_LACRJ2.211e-1946.9660 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACRD2.211e-1946.9660 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACLS2.211e-1945.6160 kDa chaperonin OS=Lactococcus lactis subsp. cre... [more]
CH60_LACLM2.211e-1945.6160 kDa chaperonin OS=Lactococcus lactis subsp. cre... [more]
CH60_HALOH2.211e-1943.8660 kDa chaperonin OS=Halothermothrix orenii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC07010G10SK SaltLeaf1 Citrus clementina cDNA clone C07010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300491 ID=CX300491; Name=CX300491; organism=Citrus clementina; type=EST; length=537bp
GGAAGGTATTGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATC
ATGTTCCTGCTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGT
GCTGACATTGTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCA
CAATGCTGGAGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGCTAGTG
AATGGACGACTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTT
CAGGCTGGAGTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGCAGAA
TGCGGCTTCAGTTGCAGGAATGGTCCTGACCACTCAGGCTATTGTCGTGG
AGAAGCCAAAGCCCAAAACTCCGGTAGCCGCTCCGCCACAAGGTCTTATG
GTGTAATCTCTAGGACTCTCCAGATTTAGTTAGGAGGTTTATAGATGAAA
GAGTGGTTTTATTGCGGTGAACTGAAAAGACAAGTTTTACTTAATTGATA
TAAAATCGTGTCTTTTTTGTAAAAAAAAAAAAAAAAA
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