CX300491
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.693e-19 Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 340 EGIVPGGG AL++ + + +K E+ D+ G DIV+KA+VAP IA NA + + G+NA TD YE++++AGVIDP KV R ALQ+AASVAG+++TT+A Sbjct: 409 EGIVPGGGTALLYATKVLEGLKG--ENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVIDPTKVVRVALQDAASVAGLLITTEA 520
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIV GGG L+ L+ V AIK L++ +E++GADIV++AL P LIA NA +++ GYNA T KYE+++ AG+IDP KV RC L++AASVA L + + Sbjct: 463 EGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIV GGG L+ L+ V AIK L++ +E++GADIV++AL P LIA NA +++ GYNA T KYE+++ AG+IDP KV RC L++AASVA L + + Sbjct: 463 EGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 52/114 (45.61%), Postives = 65/114 (57.02%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIVPGGG L HL+ + +E GA IV +AL AP IA NA + GY+A +++ NM AG++DPAKVTR ALQNAAS+A MVLTT+ I Sbjct: 407 EGIVPGGGTTLAHLAPQLEEWATANLSGEELTGAQIVARALTAPLKRIAENAGLNGAVISERVKELPFDEGYDASNNQFVNMFTAGIVDPAKVTRSALQNAASIAAMVLTTECI 520
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIV GGG AL+ D +P++++ D DE G IV++AL P +AHN+ G+NA+ + Y NML AGV+DP KVTR AL+NA S+A M LTT+A+ Sbjct: 407 EGIVAGGGTALI---DVLPSLEEVQADGDESTGVSIVRRALEEPVRQLAHNSGAEGSIVAEQVKQKGTNIGFNALENDYTNMLDAGVVDPKKVTRSALENAGSIAAMFLTTEAV 517
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EG VPGGG AL+++ +PA+ DK+E D DE G +IV+ AL AP IA NA + GYNA K+E+M++AG++DP VTR ALQNAASV+ ++LTT+A+ Sbjct: 407 EGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EG VPGGG AL+++ +PA+ DK+E D DE G +IV+ AL AP IA NA + GYNA K+E+M++AG++DP VTR ALQNAASV+ ++LTT+A+ Sbjct: 407 EGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACLS (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=groL PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIV GGG ALV+ + A+ E+ D + G +IV++AL P IA NA + + TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+ Sbjct: 407 EGIVSGGGTALVNA---IAALDKLSEEGDIQTGINIVRRALEEPVRQIAANAGYEGSVIIDKLRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACLM (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=groL PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIV GGG ALV+ + A+ E+ D + G +IV++AL P IA NA + + TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+ Sbjct: 407 EGIVSGGGTALVNA---IAALDKLSEEGDIQTGINIVRRALEEPVRQIAANAGYEGSVIIDKLRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19 Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EG+V GGG L+ D +PA+ + + DE G DIV+KAL AP LIA NA + + G++A ++ NM+++G++DPAKVTR ALQNAAS A M+LTT+ + Sbjct: 408 EGLVAGGGTTLI---DAIPALDELNLEGDEATGVDIVRKALEAPVRLIADNAGYEGSVIVEKVKSEDKGIGFDAYNGEFVNMIESGIVDPAKVTRSALQNAASAAAMLLTTECL 518 The following BLAST results are available for this feature:
BLAST of CX300491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300491 ID=CX300491; Name=CX300491; organism=Citrus clementina; type=EST; length=537bpback to top |