CX300491
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 2.196e-43 Identity = 94/134 (70.15%), Postives = 99/134 (73.88%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403 EGIVPGGGA LVHLS +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA SEW GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI QGLMV Sbjct: 413 EGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 3.171e-42 Identity = 90/134 (67.16%), Postives = 98/134 (73.13%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403 EGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA EW GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI QGL + Sbjct: 454 EGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 5.981e-41 Identity = 88/134 (65.67%), Postives = 97/134 (72.39%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403 EGIVPGGGAALVHLS +PAIK+ EDADERLGADIVQKAL++PA+LIA NA S+W GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI +GLMV Sbjct: 453 EGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 7.811e-41 Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA SEW GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI Sbjct: 409 EGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.247e-38 Identity = 89/134 (66.42%), Postives = 94/134 (70.15%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 403 EGIVPGGGA LVHLS +PAIK+ EDAD RLGADIVQKALVA SLIA NA SEW GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI +GLMV Sbjct: 451 EGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVAQ-SLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.060e-33 Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 301 EGIVPGGGAALVHLS VPAI + +DADERLGADI+QKALVAPASLIA NA A EW GYNAMTDKYEN+++AGVIDPAKVTRCALQN Sbjct: 396 EGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 4.750e-30 Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP LIA NA + GYNAM DK EN+L AGVIDPAKVTR L N+ S+AG++LTTQA+ Sbjct: 442 EGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.434e-26 Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIVPGGG L+HLS V +K L + +E++GADIV++AL AP + IA+N+ +++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+ Sbjct: 407 EGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.211e-25 Identity = 59/114 (51.75%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIVPGGG L+HL+ + ++K +L+D +E++GAD+V AL AP + IA NA ++++ GYNAMTD YE+M+ AGV+DPAKV R LQNA S+AGMVLTT+A+ Sbjct: 407 EGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25 Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 2 Query: 2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343 EGIVPGGG L++L+ V IK D +E++GADIV++AL AP IA NA S++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI Sbjct: 407 EGIVPGGGKTLIYLASKVDEIKKNF-DEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519 The following BLAST results are available for this feature:
BLAST of CX300491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300491 ID=CX300491; Name=CX300491; organism=Citrus clementina; type=EST; length=537bpback to top |