CX300491

Overview
NameCX300491
Unique NameCX300491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG A +     + A+K    + DE++G +IV+KAL  P  +IA NA                  G+NA T+ YE+M++AGVIDP KVTR ALQNAASVA ++LTTQ +
Sbjct:  409 EGIVPGGGVAYIRTLPILEALK---LEGDEQVGVNIVRKALEEPLKMIAANAGMEGTIVVEKVKEQSGAFGFNARTEVYEDMIEAGVIDPTKVTRFALQNAASVASLMLTTQCM 519          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG  L HL+  +    +     +E +GA+IV  AL AP   IA NA            +     GYNA    Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  407 EGIVPGGGTTLAHLAPALEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG  L+ L+  V AIKD L + +E++GADIV++AL  P  LIA NA            +S+    GYNA T KYE+++ AG+IDP KV RC L++A+SVA   L +  +
Sbjct:  457 EGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCV 571          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG  L+     V  + ++L D DE++GA IV KAL AP   IA NA            AS+    G++A+  ++ NM + G+IDPAKVTR ALQNAAS+AGM+LTT+ +
Sbjct:  407 EGIVPGGGVTLLRSRKAVEKLLEEL-DGDEKIGAQIVYKALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIIDPAKVTRSALQNAASIAGMLLTTEVL 520          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_ODOSI (60 kDa chaperonin, chloroplastic OS=Odontella sinensis GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGGA L HL++++          DE +GA I+ +A+VAP   IA NA              E+  GYNA  + + NM   G++DPAKVTR  LQNA S+A M+LTT+ I
Sbjct:  409 EGIVPGGGATLAHLAENLLTWAKINLKEDELIGAMIISRAIVAPLKRIAENAGINGPVIIEKVQQQEFEIGYNAAKNVFGNMYDEGIVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG ALV + + V A++      D   G  IV KAL AP   IA NA             +E   GYNA TD++ NM+ AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  407 EGIVAGGGTALVSIYNKVAAVE---ATGDVATGVKIVLKALEAPIRQIAENAGLEGSVIVEKIKHAETGVGYNAATDEWVNMIDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACLA (60 kDa chaperonin OS=Lactococcus lactis subsp. lactis GN=groL PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG ALV+    + A+    E+ D + G +IV++AL  P   IA NA            + E  TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+
Sbjct:  407 EGIVSGGGTALVNA---IAALDKLSEEGDIQTGINIVRRALEEPVRQIAANAGYEGSVIIDKLRSEEVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH602_MYCPA (60 kDa chaperonin 2 OS=Mycobacterium paratuberculosis GN=groL2 PE=3 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIV GGG AL+H    +PA+ +   + +E  GA+IV+ AL AP   IA N              S   TG NA T +YE++L+AG+ DP KVTR ALQNAAS+AG+ LTT+A+
Sbjct:  407 EGIVAGGGVALLHA---IPALDELKLEGEEATGANIVRVALEAPLKQIAFNGGLEPGVVAEKVRNSPAGTGLNAATGEYEDLLKAGIADPVKVTRSALQNAASIAGLFLTTEAV 517          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EGIVPGGG A +  S+ +  +K   ++ DE  G +I+++A+  P   I  NA              +   GYNA TD YEN+  AGV+DPAKVTR AL+NAAS+AGM LTT+ +
Sbjct:  409 EGIVPGGGVAYIRASEALEGLKG--DNEDETTGIEIIKRAIEEPLRQIVANAGKEGAVVVQKVREGKGDFGYNARTDVYENLHAAGVVDPAKVTRVALENAASIAGMFLTTECV 520          
BLAST of CX300491 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.296e-19
Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 2
Query:    2 EGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 343
            EG V GGG ALV +   +     K +  D + G +IV KAL AP   IA NA              +   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  407 EGYVAGGGTALVDVMKSIQG-NVKGDSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
The following BLAST results are available for this feature:
BLAST of CX300491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNAS5.820e-2047.3760 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH601_SYNS95.820e-2047.3760 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
RUBB_PEA7.601e-2046.09RuBisCO large subunit-binding protein subunit beta... [more]
CH60_THENE7.601e-2047.8360 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_ODOSI7.601e-2044.7460 kDa chaperonin, chloroplastic OS=Odontella sine... [more]
CH60_MACCJ7.601e-2049.1260 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_LACLA7.601e-2046.4960 kDa chaperonin OS=Lactococcus lactis subsp. lac... [more]
CH602_MYCPA7.601e-2047.3760 kDa chaperonin 2 OS=Mycobacterium paratuberculo... [more]
CH60_BACV89.927e-2044.7460 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH60_LACGA1.296e-1947.3760 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]

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Properties
Property NameValue
Genbank descriptionC07010G10SK SaltLeaf1 Citrus clementina cDNA clone C07010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300491 ID=CX300491; Name=CX300491; organism=Citrus clementina; type=EST; length=537bp
GGAAGGTATTGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATC
ATGTTCCTGCTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGT
GCTGACATTGTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCA
CAATGCTGGAGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGCTAGTG
AATGGACGACTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTT
CAGGCTGGAGTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGCAGAA
TGCGGCTTCAGTTGCAGGAATGGTCCTGACCACTCAGGCTATTGTCGTGG
AGAAGCCAAAGCCCAAAACTCCGGTAGCCGCTCCGCCACAAGGTCTTATG
GTGTAATCTCTAGGACTCTCCAGATTTAGTTAGGAGGTTTATAGATGAAA
GAGTGGTTTTATTGCGGTGAACTGAAAAGACAAGTTTTACTTAATTGATA
TAAAATCGTGTCTTTTTTGTAAAAAAAAAAAAAAAAA
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