CX300493

Overview
NameCX300493
Unique NameCX300493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig840 contig Ccv1_Contig840:1..391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG  ++KPD + SKEYF+
Sbjct:  146 DLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG  ++KPD + SKEYF+
Sbjct:  146 DLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG  ++KPD + SKEYF+
Sbjct:  146 DLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 162
            +L +GR+VDETLR ++A Q+V+++  EVCPA WKPG K+MK DP  S++YF+++
Sbjct:  146 DLPVGRNVDETLRLVKAFQFVEKH-GEVCPANWKPGSKTMKADPNGSQDYFSSM 198          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDETLR +QA Q+  ++  EVCPAGW+PG  ++KPD + SKEYF+
Sbjct:  146 DLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWQPGSDTIKPDVQKSKEYFS 196          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX2_RAT (Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA QY  E+  EVCPAGWKPG  ++KP+   SKEYF+
Sbjct:  145 DLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX2_MOUSE (Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA QY  E+  EVCPAGWKPG  ++KP+   SKEYF+
Sbjct:  145 DLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA QY  E+  EVCPAGWKPG  ++KP+   SKEYF+
Sbjct:  145 DLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA QY  E+  EVCPAGWKPG  ++KP+   SKEYF+
Sbjct:  145 DLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA QY  E+  EVCPAGWKPG  ++KP+   SKEYF+
Sbjct:  145 DLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
The following BLAST results are available for this feature:
BLAST of CX300493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PRDX1_HUMAN1.503e-1159.62Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
PRDX1_CHICK1.503e-1159.62Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
PRDX1_BOVIN1.503e-1159.62Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
TDX_TRYBR4.373e-1153.70Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
PRDX1_GECJA4.373e-1157.69Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]
PRDX2_RAT7.458e-1159.62Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1... [more]
PRDX2_MOUSE7.458e-1159.62Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3[more]
PRDX2_MACFA7.458e-1159.62Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN7.458e-1159.62Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX2_CRIGR7.458e-1159.62Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC07010H01SK SaltLeaf1 Citrus clementina cDNA clone C07010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300493 ID=CX300493; Name=CX300493; organism=Citrus clementina; type=EST; length=391bp
AACCTTGCCATTGGTAGGAGTGTTGACGAGACACTGAGAACACTTCAGGC
CTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGA
AGCCCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTAC
TTTGCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTA
TGTCTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATT
TTGCTACTTACTGTTAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCAT
TGGACTGGATTTGTCCATCTCTTTACTTCCTTTGTAATGCAGACACAACA
CAATCTCTTGTTATTGTCCTCTTCAAAAAAAAAAAAAAAAA
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