CX300493

Overview
NameCX300493
Unique NameCX300493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig840 contig Ccv1_Contig840:1..391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA Q+  ++  EVCPAGWKPG  ++KPD + SKEYF+
Sbjct:  146 DLPVGRSVDEILRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196
[Close]
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: TDX_CYNPY (Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDETLR +QA Q+  +   EVCPAGWKPG  ++KPD   SKEYF+
Sbjct:  146 DLPVGRSVDETLRLVQAFQHTDKF-GEVCPAGWKPGSDTIKPDISKSKEYFS 196
[Close]
BLAST of CX300493 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 NLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 156
            +L +GRSVDE LR +QA Q+  ++  EVCPAGWKPG  ++KPD   SKEYF+
Sbjct:  146 DLPVGRSVDEILRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVNKSKEYFS 196
The following BLAST results are available for this feature:
BLAST of CX300493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PRDX1_CRIGR7.458e-1157.69Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]
TDX_CYNPY9.741e-1159.62Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1[more]
PRDX1_RAT9.741e-1157.69Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC07010H01SK SaltLeaf1 Citrus clementina cDNA clone C07010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300493 ID=CX300493; Name=CX300493; organism=Citrus clementina; type=EST; length=391bp
AACCTTGCCATTGGTAGGAGTGTTGACGAGACACTGAGAACACTTCAGGC
CTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGA
AGCCCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTAC
TTTGCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTA
TGTCTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATT
TTGCTACTTACTGTTAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCAT
TGGACTGGATTTGTCCATCTCTTTACTTCCTTTGTAATGCAGACACAACA
CAATCTCTTGTTATTGTCCTCTTCAAAAAAAAAAAAAAAAA
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