CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 79/235 (33.62%), Postives = 120/235 (51.06%), Query Frame = 3
Query:   21 KRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            +R  L    ALVT  T GIG A    LA+ GA V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+    ++  G ++IL++NAA+  F    +D T E    +   N ++   +++   P  +  G GS++ +SSVG     P++  Y   K A+  LTKNLA E A  NIR N +AP +IKT+  +         E++    R   I R G P++ + +V  LC
Sbjct:    8 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL-HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLR---IRRLGNPEDCAGIVSFLC 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27
Identity = 83/231 (35.93%), Postives = 113/231 (48.92%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            L    ALVT  T GIG A    LA  GA V   SR Q  +D  +   + +G  VTG VC +   E REKL+     + QG ++IL++NAA+  F    +D+T E  + V S N  +   + +   P  +  G GS+V +SSV G    PS+  Y   K A+  LTKN A E A  NIR N +AP +IKT       +     E    I     I R G+P++   +V  LC
Sbjct:   12 LANKVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQG-IDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEM---IKETMQIRRLGKPEDCVGIVSFLC 238          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 78/226 (34.51%), Postives = 120/226 (53.10%), Query Frame = 3
Query:   27 WSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQ--GKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEV 698
            +SL+G  ALVTG +RGIG    + LAR+GA V    RN   LD+    ++ +G K + +V D++ ++    +I+ V +I +  G ++ILINNA I    P  + + +D   + STN  +VF + Q         G G IV I SV      P ++ Y A KGA+  LTK +A +W +  ++ N +AP    T M    E      EF D + ++TP GR G+ +E+
Sbjct:    7 FSLSGARALVTGASRGIGLTLAKGLARYGAEVVLNGRNAESLDSAQSGFEAEGLKASTAVFDVTDQDA---VIDGVAAIERDMGPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMT---ERLVADEEFTDWLCKRTPAGRWGQVEEL 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 78/226 (34.51%), Postives = 122/226 (53.98%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLV 710
            L G   L+TG   GIG AT    A+ GA V     ++  LD+ + E +    KV   V +++ R+Q ++++E V   + G++++L+NNA I      V +  ED   V + N + VF+++Q+  P      NGSIV +SSV G+ G P  + Y A K  +  +TK  A E A  NIR N VAP  I+T M    E+ PE +   +    + P+GR G+P+EV+ ++
Sbjct:    3 LEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYVLNVTDRDQIKEVVEKVVQKY-GRIDVLVNNAGITRDALLVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMT---EKLPEKAR--ETALSRIPLGRFGKPEEVAQVI 222          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 80/234 (34.19%), Postives = 112/234 (47.86%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWK-----NKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G  A+VTGG  GIG A V+EL   G+ V   SR    L +   E +      K  +V    C++ + E+   L+++    F GK+N L+NN    F+ P   I+++    V  TN    F++ +  +  +     GSIV I  V    G P     GA +  +  LTK+LA EWA   IR N VAP VI  S       G  G  F +G  ++ P  R G P+EVSS+V  L
Sbjct:   16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTF-GKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNII-VPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVI-YSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFL 246          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 75/230 (32.61%), Postives = 118/230 (51.30%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            LN  TA+VTG +RGIG +   +LA+ GA +V   S N+ + +  + E K+ G K      D+S+ E  + +I+   S+F   ++IL+NNA I      + +  ++   V + N + VF+ ++          +G I+ +SS+ GV G P  + Y A K  +  LTK+ A E A  NI  N +AP  I T M           +  D + +Q P+ R GEP +VSS+V  L
Sbjct:    2 LNDKTAIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFS-TIDILVNNAGITRDNLIMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKL-----AKDVQDEMLKQIPLARFGEPSDVSSVVTFL 225          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 73/230 (31.74%), Postives = 119/230 (51.74%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM-IKPFEEGPEGS--EFLDGIARQTPIGRAGEPDEVSSLV 710
            +L   T L+TGG  GIG+A V+      A V     ++ + +A + +  N       +  D++     +  I +    F G L++LINNA I  V P  ++   + + V + N   +F +S+ A      SG G+I+   SVGGV   P +  Y A KG + QLT+++A ++AK NIR N V P +I T +  K F E  EG+  E     A+  P+ R G+P+E+++++
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHT--DITDEPACQNAIRSAVDKFGG-LDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVM 228          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 73/230 (31.74%), Postives = 119/230 (51.74%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM-IKPFEEGPEGS--EFLDGIARQTPIGRAGEPDEVSSLV 710
            +L   T L+TGG  GIG+A V+      A V     ++ + +A + +  N       +  D++     +  +E+    F G L++LINNA I  V P  ++   D + V   N   +F +S+ A     A+G G+I+   SVGG+   P +  Y A KG + QLTK++A ++AK  IR N V P +I T +  K F E  EG+  E     A+  P+ R G+P+E+++++
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGEAMVRKENNDRLHFVQT--DITDEAACQHAVESAVHTFGG-LDVLINNAGIEIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVM 228          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 81/229 (35.37%), Postives = 110/229 (48.03%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEE--GPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            G  ALVTGGT GIG AT ++    GA V+   R Q ELD  +++    G  VTG   D+S  E  +KL + +    +GKL+IL  NA I    P  +IT E +      N +      Q A  LF     GSI+   S  G  G P+ S+YGA K A+  L +N   +     IR N V+P  I T     ++E  G    E L+      P G+ G P+EV++ V  L
Sbjct:    6 GKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQ---IGKNVTGVQGDISKLEDLDKLYDIIKQ-EKGKLDILFANAGIGNFLPLGEITEEQVDRTFDINVKGTIFTVQKALSLF-PDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILT---PAYDELFGDALEEVLENSRNTVPAGKVGTPEEVANAVSFL 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: PECR_PONAB (Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo abelii GN=PECR PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 78/234 (33.33%), Postives = 112/234 (47.86%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWK-----NKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G  A+VTGG  GIG A V+EL   G+ V   SR    L +   E +      K  +V    C++ + E+   L+++   IF GK+N L+NN    F+     I+++    V  TN    F++ +  +  +     GSIV I  V    G+P     GA +  +  LTK+LA EWA   +R N VAP VI  S       G  G  F +   ++ P  R G P+EVSS+V  L
Sbjct:   16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAGELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDIF-GKINFLVNNGGGQFLSLAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNII-VSIKTGLPLAVHSGAARAGVYNLTKSLALEWACSGVRINCVAPGVI-YSQTAVENYGSYGQSFFEESFQKIPAKRIGVPEEVSSVVCFL 246          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
DHRS4_PIG8.077e-2833.62Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_RAT4.009e-2735.93Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
GNO_GLUOX3.394e-2634.51Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
FABG_THEMA1.684e-2534.513-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
PECR_HUMAN4.148e-2434.19Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
FABG_BACSU9.241e-2432.613-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
BACC2_BACSU2.059e-2331.74Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC_BACSU2.689e-2331.74Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
YKVO_BACSU3.512e-2335.37Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]
PECR_PONAB1.022e-2233.33Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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