CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YIV6_YEAST (Uncharacterized oxidoreductase YIR036C OS=Saccharomyces cerevisiae GN=YIR036C PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFG--AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMS-------TVSSTNFESVFHLSQLAHPLFKASGN-GSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEE--GPEG 632
            G   L+TG +RGIG   V+ +       IV+  +R +  L +   E+    F     V D++ R + E L+E +     GKL+ ++ NA +  ++P   I+  +          +   NF S+  L  L  PL K+S   G+IVF+SS   V+     S YG  K A+N    ++A E   D +R   +AP V+ T M K   E  GP+G
Sbjct:    2 GKVILITGASRGIGLQLVKTVIEEDDECIVYGVARTEAGLQSLQREYGADKFVYR--VLDITDRSRMEALVEEIRQK-HGKLDGIVANAGM--LEPVKSISQSNSEHDIKQWERLFDVNFFSIVSLVALCLPLLKSSPFVGNIVFVSSGASVKPYNGWSAYGCSKAALNHFAMDIASEEPSDKVRAVCIAPGVVDTQMQKDIRETLGPQG 206          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: BUDC_KLETE (Acetoin(diacetyl) reductase OS=Klebsiella terrigena GN=budC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 60/186 (32.26%), Postives = 82/186 (44.09%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGN-GSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM 602
            ALVTG  +GIG A    L + G  V     N     A   E    G +      D+S R+Q    +E       G  N+++NNA IA   P   IT E +  V + N + V    Q A   FK  G+ G IV   S  G  G P +++Y + K A+  LT+  A + A   I  N   P ++KT M
Sbjct:    5 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATATAVAAEINQAGGRAVAIKVDVSRRDQVFAAVEQARKAL-GGFNVIVNNAGIAPSTPIESITEEIVDRVYNINVKGVIWGMQAAVEAFKKEGHGGKIVNACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPM 189          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YM71_YEAST (Uncharacterized oxidoreductase YMR226C OS=Saccharomyces cerevisiae GN=YMR226C PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 58/190 (30.53%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   45 TALVTGGTRGIGHATVEEL--ARFGAIVHTCSRNQIELDARLHEWKNKGF---KVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKT 596
            T L+TG + GIG AT  E   A  G +    +  ++E    L +  ++ F   KV  +  D++  E+ +  IE +   F+  ++IL+NNA  A     V  I  ED+  V  TN  ++ +++Q   P+F+A  +G IV + S+ G    P+ S+Y A K A+   T +L  E     IR   +AP +++T
Sbjct:   15 TVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKD-IDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVET 203          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y2567_STAAR (Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2567 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 49/190 (25.79%), Postives = 93/190 (48.95%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM 602
            L    A+VTG   GIG A    L   GA V    RN+ +L    ++      KV  +  D++ +E+ ++LI+     F G L+I+IN+A         D   ++  ++   N +   + ++ A P      +G ++ I+S+ G     S ++Y A K A++ +T+ L  E AK  ++  +++P ++ T++
Sbjct:    4 LTDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPT--DVTKKEEVDELIKMAQQTF-GGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAKAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAI 190          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y2146_BRAJA (Probable short-chain type dehydrogenase/reductase blr2146 OS=Bradyrhizobium japonicum GN=blr2146 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 63/231 (27.27%), Postives = 102/231 (44.16%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPT----VDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            G  A+VTG   GIG A    +AR G  V     +     A   +   +         D++  +    L ET    F G +++L+NNA+   + P     +++         +TN        + A P   A G G+IV +SS  G+ G  +++ Y A K AMN L+ +LA ++    IR N VAP +I T  +    +    +     + R   + R G P++V++LV  L
Sbjct:    6 GKVAVVTGAGAGIGKACALAIAREGGRVVVADIDGSAAIACTAQIAAEAGHALALAIDIADAQAVAALFETAERHFGG-VDLLVNNASAMHLTPRDRAILELELAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTALTSYAASKAAMNMLSSSLATQYGHAQIRCNAVAPGLIMTERLLAKLDACMQTH----LRRHQLLPRVGRPEDVAALVAFL 231          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 51/193 (26.42%), Postives = 92/193 (47.67%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQ---IELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM 602
            L    A+VTG + GIG +  E LA  G  V    R++    E+  R+ +  NK   V  S+ D++ +E+  +L+E     F G+++IL+N+A +       +   E    +   N +   +      P      +G I+ I+S+ G       +LY A K A++ +T+ L  E AK  +R  +++P ++ T +
Sbjct:    4 LQDKVAVVTGASSGIGASIAETLANQGVKVVLTGRDESRLAEVAKRIQD--NKQAVVETSIVDVTHKEEVTELVEKTKEKF-GQIDILVNSAGLMLSSAITEGDVEAWEAMIDVNIKGTLYTINAVLPSMLNQSSGHIINIASISGFEVTKKSTLYSASKAAVHSITQGLEKELAKTGVRVTSISPGMVDTPL 193          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: PHAB_PARDE (Acetoacetyl-CoA reductase OS=Paracoccus denitrificans GN=phaB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 69/228 (30.26%), Postives = 101/228 (44.30%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFG-AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGN---GSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            ALVTGG+RGIG A  + L   G  +    + N     A   E   K +K   SV D  +     K +E       G + +L+NNA I        +T +    V  TN   +F+++   HP++    +   G IV ISS+ G +G    + Y A K      TK LA E A+  I  N + P  I T M++  +E        +GI  Q P+    EP+E++  V  L
Sbjct:    5 ALVTGGSRGIGAAISKALKEAGYTVAANYAGNDDAARAFTEETGIKTYK--WSVADYDACAAGIKQVEEEL----GPIAVLVNNAGITRDAMFHKMTPQQWKEVIDTNLTGLFNMT---HPVWSGMRDRKYGRIVNISSINGQKGQAGQANYSAAKAGDLGFTKALAQEGARAGITVNAICPGYIGTEMVRAIDE----KVLNEGIIPQIPVAAWAEPEEIARCVVFL 219          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: ARDH_CANTR (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida tropicalis GN=ARD PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 64/236 (27.12%), Postives = 103/236 (43.64%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRN--QIELDAR-LHEWKNKGFK---------VTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQ-LAHPLFKASGNGSIVFISSVGG--VRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDE 695
            L+G   ++TGG+ G+       L   GA +     N  + +  AR + +W  +  K         V+   C++   E  E   + +        ++LIN A  A   P  +  A++   +   N    F++SQ  A PL + +  GSI+ I S+ G  V       +Y   K  +  L ++LACEWAK NIR NT++P  I T + +    G   +E       + P+ R  EP E
Sbjct:   18 LDGKLVIITGGSGGLSAVVSRALLAKGADIALIDMNLERTQQAARDVLQWGEEQMKGKHESPIGQVSAWSCNIGDAEAVELTFKAINEHHGKVASVLINTAGYAENFPAEEYPAKNAENIMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISG--HTEMKTEWESKIPMKRMAEPKE 251          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YWC4_CAEEL (Uncharacterized oxidoreductase W01C9.4 OS=Caenorhabditis elegans GN=W01C9.4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 61/236 (25.85%), Postives = 98/236 (41.53%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVC-----DLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLS-QLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            +  G   LVTGG  GIG A     A   A V   +R   +L+    +      K+TG  C     D+          + +   F     IL+NNAA  F+  T  +++    T+     +  F+++ +L     +     SI  I++     G P +      K  +  +TK+LA EW+K  +R N V+P  I T          E  +  + +    P GR G P+EV++LV  +
Sbjct:   22 AFKGKLVLVTGGGTGIGKAIATTFAHLRATVVIAARRMEKLEQTARDIT----KITGGTCEPFQMDIKDPGMVSDAFDKIDMKFGKVPEILVNNAAGNFIMATELLSSNAYGTIIDIVLKGTFNVTTELGKRCIQNKTGASITSITAGYARAGAPFIVPSAVSKAGVETMTKSLATEWSKYGLRFNAVSPGPIPTKGAWGRLNSGEMGDIAEKMKFLNPEGRVGSPEEVANLVAFI 253          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y4LA_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4lA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02730 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 63/232 (27.16%), Postives = 103/232 (44.40%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPT----VDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTS-MIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            G  A+VTG   GIG A    +AR G  V     +     A   +   +         D++  +    L ET    F G +++L+NNA+   + P     +D+         +TN        + A P   A G G+IV +SS  G+ G  + + Y   K AMN L+ +LA ++    IR N VAP +I T  ++   ++  +       ++R   + R G P++V++LV  L
Sbjct:    6 GKVAVVTGAGAGIGKACALAIAREGGRVVVADLDGSAAIACTAQIAAEAGNALAMAMDIADAQAVAALFETAERHFGG-VDLLVNNASAMHLTPRDRAILDLDLAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTAQTSYAVSKAAMNMLSASLATQYGHAQIRCNAVAPGLIMTERLLAKLDKCMQRH-----LSRHQLLPRVGHPEDVAALVAFL 231          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
YIV6_YEAST1.479e-1330.48Uncharacterized oxidoreductase YIR036C OS=Saccharo... [more]
BUDC_KLETE1.479e-1332.26Acetoin(diacetyl) reductase OS=Klebsiella terrigen... [more]
YM71_YEAST1.931e-1330.53Uncharacterized oxidoreductase YMR226C OS=Saccharo... [more]
Y2567_STAAR1.931e-1325.79Uncharacterized oxidoreductase SAR2567 OS=Staphylo... [more]
Y2146_BRAJA1.931e-1327.27Probable short-chain type dehydrogenase/reductase ... [more]
Y0419_STAS11.931e-1326.42Uncharacterized oxidoreductase SSP0419 OS=Staphylo... [more]
PHAB_PARDE1.931e-1330.26Acetoacetyl-CoA reductase OS=Paracoccus denitrific... [more]
ARDH_CANTR1.931e-1327.12D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
YWC4_CAEEL2.523e-1325.85Uncharacterized oxidoreductase W01C9.4 OS=Caenorha... [more]
Y4LA_RHISN2.523e-1327.16Uncharacterized short-chain type dehydrogenase/red... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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