CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 64/235 (27.23%), Postives = 105/235 (44.68%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVC----DLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASG-NGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM-IKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G    +TG   G+G A      RFG        N        +E K +  K  G       D++  E  + +++T    F G L+I+INNA +    P+ ++  +D   V  TN    F  S+ A   F  +   G+++ +SSV  V   P    Y A KG +  +T+ LA E+A   IR N + P  I T +  + F +  + ++    +    P+G  GEP+E++++   L
Sbjct:    5 LKGKVVAITGAASGLGKAMA---IRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEF-GTLDIMINNAGLENPVPSHEMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKAD----VESMIPMGYIGEPEEIAAVAAWL 231          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 62/231 (26.84%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASG-NGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G   ++TG + G+G +     A   A +V      + E ++ L E K  G +      D++       L+++    F GKL+++INNA +     + +++  D + V  TN    F  S+ A   F  +   G+++ +SSV      P    Y A KG M  +T+ LA E+A   IR N + P  I T +       PE    ++ +    P+G  GEP+E++++   L
Sbjct:    5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF-GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESM---IPMGYIGEPEEIAAVAAWL 231          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 63/231 (27.27%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASG-NGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G   ++TG + G+G A     A   A +V      + E ++ L E K  G +      D++       L+++    F GKL+++INNA +     + +++  D + V  TN    F  S+ A   F  +   G+++ +SSV      P    Y A KG M  +T+ LA E+A   IR N + P  I T +       PE    ++ +    P+G  GEP+E++++   L
Sbjct:    5 LEGKVVVITGSSTGLGKAMAIRFATEKAKVVVNYRSKEEEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSSIKEF-GKLDVMINNAGMENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESM---IPMGYIGEPEEIAAVAAWL 231          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DH12A_XENLA (Estradiol 17-beta-dehydrogenase 12-A OS=Xenopus laevis GN=hsd17b12-A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 53/194 (27.32%), Postives = 89/194 (45.88%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMST----VSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTG T GIG A  EELAR G  +   SR+  +LD      K   FKV   +      +  E        +   ++ +L+NN  +++  P   +   D+      + + N  SV  +++L  P     G G I+ ISS  G+  +P +++Y A K  ++  ++ L  E+    I   +V P+ + T + K
Sbjct:   54 GKWAVVTGATDGIGKAYAEELARRGMSIVLISRSPEKLDEAAKHIKET-FKVETKIIAADFGKPTEIYERIEAGLRDLEIGVLVNNVGVSYEYPEYFLEIPDLENTLDKMININIMSVCQMTRLVLPGMLGRGKGVILNISSASGMYPVPLLTVYSATKAFVDFFSRGLHAEYRNKGINVQSVLPFYVATKLAK 246          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: CBR4_BOVIN (Carbonyl reductase family member 4 OS=Bos taurus GN=CBR4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 64/216 (29.63%), Postives = 94/216 (43.52%), Query Frame = 3
Query:   54 VTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVS 701
            V GG+RGIG A    +A+ G  +   +RN   L+       + G       CD++     +   E +     G++N L+N A I      V    EDM +   TN        + A         GSIV + SV G++G    S+Y A KG +   ++ LA E AK  IR N VAP  I T M K   E        + + +  P+GR G+  +V+
Sbjct:    7 VFGGSRGIGRAVARLMAQRGYRLAIVARN---LEGARAAAGDLGGDHLALSCDVAKEHDVQNTFEEIEKNL-GRVNFLVNAAGINRDNLLVRTNTEDMLSQLHTNLLGSMLTCRAALKTMIKQQRGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDMTKDLNE--------ELLKKNIPLGRFGDALDVA 210          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YJGI_ECOLI (Uncharacterized oxidoreductase yjgI OS=Escherichia coli (strain K12) GN=yjgI PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 62/231 (26.84%), Postives = 98/231 (42.42%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVR-GIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            +  G T L+ GG+RGIG A V      GA V        +   RL +        TG+    +    R+ +I+ V     G L+IL+ NA I      +++ A+D+  +   N  + +H S       +    G I+ I SV G R  +  ++ Y A K A+  + + LA ++    I  N V P  I T      +  P      D +     I R G+P+EV+ +V  L
Sbjct:    3 AFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQ-------ETGATAVFTDSADRDAVIDVVRK--SGALDILVVNAGIGVFGEALELNADDIDRLFKINIHAPYHAS--VEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDT------DANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWL 216          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 60/225 (26.67%), Postives = 100/225 (44.44%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSL 707
            L G  A+VTGG +GIG A  +  A  G  V     ++     R    + +G  VT    D++     + ++     I+ G +++L+NNAA+  VK   +   E+   V   N    +  S+         G G I+ I+S    +  P    Y A KG +  LT +LA   ++ +IR  +++P  I+TS  K  +   +  +       Q P GR G P +++ L
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGG-VDVLVNNAAVMSVKSIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIETSEWKK-KSLRKKPDLRPIDHEQHPAGRVGNPLDIAHL 224          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 63/226 (27.88%), Postives = 105/226 (46.46%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV---DITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEG-PEGSEFLDGIARQTPIGRAGEPDEVSS 704
            G   +VTGG RGIG   V      GA V  C +++    A   E     F +    CD++  E    L+      F G+L+ ++NNA   +  P     + +A+    +   N    + L++LA P  + S  G+++ ISS+ G  G      Y A KGA+  +TK LA + ++  +R N ++P  I T + +      P+ +  +       P+GR G+P EV++
Sbjct:    9 GKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPGTVFLL----CDVTREEDVRTLVSETIRRF-GRLDCIVNNAG--YHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALPHLRKS-RGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPLWEELAASTPDPTATIREGTLAQPLGRMGQPAEVAA 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB12_XENTR (Estradiol 17-beta-dehydrogenase 12 OS=Xenopus tropicalis GN=hsd17b12 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 51/194 (26.29%), Postives = 92/194 (47.42%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMST----VSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTG T GIG A  EELA+ G  +   SR+  +L+    + K K FKV   +      +  E      + +   ++ +L+NN  +++  P   +   D+      + + N  SV  +++L  P     G G I+ ISS  G+  +P +++Y A K  ++  ++ L  E+    +   +V P+ + T + K
Sbjct:   56 GKWAVVTGATDGIGKAYAEELAKRGMNIVLISRSPEKLEEVAKQIKEK-FKVETKIIAADFGKPTEIYGRIESGLRDLEIGVLVNNVGVSYEHPEYFLEIPDLENTLDKMININITSVCQMTRLVLPGMLGRGRGVILNISSASGMYPVPLLTVYSATKAFVDFFSRGLQAEYRSKGVTVQSVLPFYVATKLAK 248          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YXNA_BACSU (Uncharacterized oxidoreductase yxnA OS=Bacillus subtilis GN=yxnA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 51/175 (29.14%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASG-NGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKD 554
            L     ++TG + GIG  T    A  GA V   +RN+  L     E K KG        D+   E   ++ ET  S F G+ +  +NNAA++     +D+T EDM  +  TNF    + ++ A   +   G  G+++ + S+ G RG    S Y + K A++  T+++  E  K+
Sbjct:   29 LKDQVIVITGASSGIGLVTARMAAEKGAKVVAAARNEEALKELTDELKEKGHDAIWVKADVGKEEDVNRIAETAISTF-GRFDTWVNNAAVSTFGHAMDVTVEDMKRMFDTNFWGPVYGTRAAVKHYTGRGVPGALINVGSLFGDRGTVIQSTYASAKFALHGWTESIRMELEKE 202          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
DHG_BACSU2.523e-1327.23Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
DHG_BACME2.523e-1326.84Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
DHG1_BACME2.523e-1327.27Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
DH12A_XENLA2.523e-1327.32Estradiol 17-beta-dehydrogenase 12-A OS=Xenopus la... [more]
CBR4_BOVIN2.523e-1329.63Carbonyl reductase family member 4 OS=Bos taurus G... [more]
YJGI_ECOLI3.295e-1326.84Uncharacterized oxidoreductase yjgI OS=Escherichia... [more]
Y019_THEMA3.295e-1326.67Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
DHB14_BOVIN3.295e-1327.8817-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
DHB12_XENTR3.295e-1326.29Estradiol 17-beta-dehydrogenase 12 OS=Xenopus trop... [more]
YXNA_BACSU4.303e-1329.14Uncharacterized oxidoreductase yxnA OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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