CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB12_ANAPL (Estradiol 17-beta-dehydrogenase 12 OS=Anas platyrhynchos GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNK-GFKVTGSVCDLSSREQREKLIETVTSIFQG-KLNILINNAAIAFVKPTVDITAEDMST----VSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTG T GIG A  +ELA+ G  V   SR++ +LD    E   + G +    V D     +RE + + + +  +G ++ +L+NN  I++  P   I   D+      + + N  SV  +++L  P       G I+ ISS  G+   P ++LY A K  ++  ++ L  E+    I   +V P+ + T M K
Sbjct:   48 GAWAVVTGATDGIGKAYAKELAKRGMKVALISRSKEKLDQVAGEITEQYGVETKVIVADFG---EREDIYDRIRAGLEGLEIGVLVNNVGISYSYPEYFIDVPDLDKTIDKMININIMSVCKMTRLVLPGMLERSKGVILNISSAAGMYPTPLLTLYSASKAFVDYFSRGLHAEYKSKGIIVQSVMPYYVATKMSK 240          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DH12A_DANRE (Estradiol 17-beta-dehydrogenase 12-A OS=Danio rerio GN=hsd17b12a PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 59/196 (30.10%), Postives = 100/196 (51.02%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELD--ARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDM----STVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTG T GIG +  EELAR G  +   SR+Q +LD  A+  E   K    T +V D S  +   K+ + +  +   ++ IL+NN  I++  P   +   D+    +T+ + N  SV  +++L  P  +A   G I+ ISS  G+  +P +++Y + K  ++  ++ L  E+    I   +V P+ + T M K
Sbjct:   56 GKWAVVTGATDGIGKSYAEELARRGFSMMLISRSQEKLDDVAKSLESTYKVETKTIAV-DFSQIDVYPKIEKGLAGL---EIGILVNNVGISYSYPEFFLHIPDLENFITTMINVNITSVCQMTRLVLPRMEARAKGVILNISSASGMFPVPLLTIYSSTKAFVDFFSRGLQTEYKCKGIIIQSVLPFFVATKMTK 247          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 58/190 (30.53%), Postives = 87/190 (45.79%), Query Frame = 3
Query:   45 TALVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKN-KGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            TA++TG T GIG A    LA+ GA IV        E+     E        V     D++   +   ++  V   F G  +IL+NNA + FV+   D   E    + + N  S FH  + A P  K  G G I+ I+S  G+   P  S Y A K  +  LTK +A E A+  +  N++ P  + T +++
Sbjct:    4 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGA-DILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVE 192          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: SORD_KLEPN (Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella pneumoniae GN=sorD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 73/245 (29.80%), Postives = 110/245 (44.90%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVD---------ITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVI-KTSMIKP-FEEGPEGS------EFLDGIARQT-PIGRAGEPDEVSSLV 710
            +L     +VTGG  GIG A V+EL   GA V       I    R H   N  F  T    D+SS  + ++ I+ +   +  +++ L+NNA + F +  VD         +       + + N + VF +SQ           G IV +SS  G+ G    S Y A K A+N  T++ + E  K  IR   VAP ++ KT +  P +EE    +      +  +G  +   PIGRAG+  EV+  V
Sbjct:    6 NLKDNVIIVTGGASGIGLAIVDELLSQGAHVQMID---IHGGDRHHNGDNYHFWST----DISSATEVQQTIDAIIQRWS-RIDGLVNNAGVNFPRLLVDEKAPAGRYELNEAAFEKMVNINQKGVFFMSQAVARQMVKQRAGVIVNVSSESGLEGSEGQSCYAATKAALNSFTRSWSKELGKYGIRVVGVAPGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPIGRAGKLSEVADFV 242          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 62/226 (27.43%), Postives = 100/226 (44.25%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            ++TG +RGIG A    L + G  ++   +R+  E +    + +  G +      D+S     + +++T    + G +++++NNA I      + +       V + N   VF  +Q A  +      G I+ ISSV G+ G    + Y A KG +   +K  A E A  NI  N V P  I + M     E  E       I    P+GR G+ +EV+ LV  L L
Sbjct:   80 VITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGGQAITFGGDVSKATDVDAMMKTALDKW-GTIDVVVNNAGITRDTLLIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGEDMEKK-----ILGTIPLGRYGKAEEVAGLVEFLAL 299          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 62/226 (27.43%), Postives = 99/226 (43.81%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            +VTG +RGIG A    L + G  ++   +R+  E +    + +  G +      D+S     E +++T    + G +++++NNA I      + +       V   N   VF  +Q A  +      G I+ I+SV G+ G    + Y A K  +   +K  A E A  NI  N V P  I + M     E  E       I    P+GR G+P++V+ LV  L L
Sbjct:   76 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYGQPEDVAGLVEFLAL 295          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 62/226 (27.43%), Postives = 99/226 (43.81%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            +VTG +RGIG A    L + G  ++   +R+  E +    + +  G +      D+S     E +++T    + G +++++NNA I      + +       V   N   VF  +Q A  +      G I+ I+SV G+ G    + Y A K  +   +K  A E A  NI  N V P  I + M     E  E       I    P+GR G+P++V+ LV  L L
Sbjct:   81 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYGQPEDVAGLVEFLAL 300          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB4_HUMAN (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 54/191 (28.27%), Postives = 87/191 (45.55%), Query Frame = 3
Query:   36 NGMTALVTGGTRGIGHATVEELARFGAIV---------HTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAP 581
            +G   LVTG   G+G A     A  GA+V             +  +  D  + E + +G K   +V +  S E+ EK+++T    F G++++++NNA I   +    I+ ED   +   +    F +++ A    K    G I+  SS  G+ G    + Y A K  +  L  +LA E  K NI  NT+AP
Sbjct:    8 DGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGK---AVANYDSVEEGEKVVKTALDAF-GRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAP 194          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DH12B_XENLA (Estradiol 17-beta-dehydrogenase 12-B OS=Xenopus laevis GN=hsd17b12-B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 52/194 (26.80%), Postives = 90/194 (46.39%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMST----VSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTG T GIG A  EELAR G  +   SR+  +L+      K K FKV   +      +  E        +   ++ +L+NN  I++  P   +   D+      + + N  SV  +++L  P     G G ++ ISS  G+  +P +++Y A K  ++  ++ L  E+    +   +V P+ + T + K
Sbjct:   54 GKWAVVTGATDGIGKAYAEELARRGMNIVLISRSPEKLEEAAIHIKQK-FKVETKIIAADFGKPTEIYERIEAGLRDLEIGVLVNNVGISYEYPEYFLEIPDLENTLDKMININIMSVCQMTRLVLPGMLGRGKGVVLNISSASGMYPVPLLTVYSATKAFVDFFSRGLHAEYRSKGVTVQSVLPFFVATKLAK 246          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: CBR4_MOUSE (Carbonyl reductase family member 4 OS=Mus musculus GN=Cbr4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 66/222 (29.73%), Postives = 98/222 (44.14%), Query Frame = 3
Query:   54 VTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            V GG+RGIG A  + +A+ G  +   SRN   L+         G       CD++  +  +   + +     G +N L+N A I      V    EDM +   TN        + A       G GSIV + S+ G++G    S Y A KG +   +++LA E A+  IR N VAP  I+T M +  +E        +   +  P+GR GE  EV+  V  L
Sbjct:    7 VFGGSRGIGRAVAQLMAQKGYRLAIVSRN---LEVAKVTAGELGGNHLAFRCDVAKEQDVQSTFQEMEK-HLGPVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTCKAAMKTMIQQG-GSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKE--------EHFKKNIPLGRFGETLEVAHAVVFL 215          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
DHB12_ANAPL4.303e-1329.08Estradiol 17-beta-dehydrogenase 12 OS=Anas platyrh... [more]
DH12A_DANRE4.303e-1330.10Estradiol 17-beta-dehydrogenase 12-A OS=Danio reri... [more]
BDHA_RHIME4.303e-1330.53D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
SORD_KLEPN5.620e-1329.80Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella... [more]
FABG_ARATH5.620e-1327.433-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG3_BRANA5.620e-1327.433-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]
FABG1_BRANA5.620e-1327.433-oxoacyl-[acyl-carrier-protein] reductase 1, chlo... [more]
DHB4_HUMAN5.620e-1328.27Peroxisomal multifunctional enzyme type 2 OS=Homo ... [more]
DH12B_XENLA5.620e-1326.80Estradiol 17-beta-dehydrogenase 12-B OS=Xenopus la... [more]
CBR4_MOUSE5.620e-1329.73Carbonyl reductase family member 4 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
back to top