CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: ARDH_PICST (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Pichia stipitis GN=ARDH PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 63/236 (26.69%), Postives = 99/236 (41.95%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHE---WKNKGFK---------VTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQ-LAHPLFKASGNGSIVFISSVGG--VRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDE 695
            L+G  A++TGG+ G+       L   GA V     N     +   E   W  +  K         V+   C++   E  +    ++        ++LIN A      P     A +  ++   N    F++SQ  A PL + +  GSI+ I S+ G  V       +Y   K  +  L ++LACEWAK NIR NT++P  I T + +    G   +E  +    + P+ R  EP E
Sbjct:   14 LDGRLAIITGGSGGLAAVISRALLAQGADVALIDMNLERTKSAAKEVLGWGEETLKGEHASAIGQVSAWSCNIGDAEAVDATFSSINEHHGKIADLLINTAGYCENFPAETYPATNAESIMKVNGLGSFYVSQSFARPLIQNNLRGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLVRSLACEWAKYNIRVNTLSPGYILTPLTRNVISG--HTEMKEAWESKIPMKRMAEPKE 247          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHRS1_HUMAN (Dehydrogenase/reductase SDR family member 1 OS=Homo sapiens GN=DHRS1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 54/199 (27.14%), Postives = 91/199 (45.73%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFV-------KPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            +NG   +VTG +RGIG     +L + GA V+   R+   L     E ++ G +    VCD S   +   L E V    QG+L++L+NNA            K   +  A     +++      +  S     L   +G G IV ISS G ++ + +V  YG  K A ++L  + A E  +  +   ++ P +++T ++K
Sbjct:    5 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVP-YGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLK 202          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHK2_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 2 OS=Streptomyces violaceoruber GN=gra-orf6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 66/228 (28.95%), Postives = 97/228 (42.54%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITA---EDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIA----RQTPIGRAGEPDEVSSLV 710
            ALVTG + GIG    + LA  G  V   S   +E   +          V     D+S      +L++T    + G+L++L+NNA      P  D+ A   E    +   N    +  +  A P    SGNGS+V +SS+ G R   S   Y    G     T+ LA       +R N VAP +I+T          + S+F   IA    + TP+ R G P++V+  V
Sbjct:   11 ALVTGSSSGIGQTVAQRLAAEGYRVVVNSARSVEDGEKTAAALPDALYVRA---DVSEEADARRLVDTAVEHY-GRLDVLVNNAGRTRAIPHADLAAATPEVWREILGLNVIGTWQTTVAAMPHLARSGNGSVVNVSSIAGSRPAGSSIPYAVSNGGHRAQTRLLA-NTVGPAVRVNAVAPGLIETPW-------TQNSDFFAPIAEHVRQTTPLRRTGRPEDVAEAV 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 66/231 (28.57%), Postives = 107/231 (46.32%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGA----IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLA-HPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKT-SMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSS 704
            L G TA+VTG ++GIG A  E   RFG     +V     +    D  L   K  G K      D+S  E  + L++T    F G L++++NN+    V+    +++ ED   V   N    F  ++ A + + K +  G+++ ISSV      P    Y   KG +  +T+ LA  +A   IR N +AP  I T S +   +E     +      ++ P+   G+P+EV++
Sbjct:    5 LTGKTAIVTGSSKGIGKAIAE---RFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHF-GTLDVMVNNSGFNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQL-----KKIPMKAFGKPEEVAA 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 68/230 (29.57%), Postives = 103/230 (44.78%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQR--EKLIETVTSIFQ--GKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLV 710
            L    A +TGG  GIG    E   R G      SR+      R+ E   K    TG  C   S + R    ++  V    +  GK++ILIN AA  F+ P   ++     TV   +    F++S++ +  F     G IV I++   +RG       GA K A++ +T++LA EW   NIR N++AP  I  +       GP+ S     ++  +PI R G   E++  V
Sbjct:   26 LQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVSRSL----PRVSEAAKKLVAATGKRCLPLSMDVRVPPAVMAAVDQALKEFGKIDILINCAAGNFLCPASALSFNAFKTVVDIDTLGTFNVSRVLYEKFFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQNIRVNSLAPGAISGTEGLRRLGGPKASSKFKYLS--SPIPRLGTKTEIAHSV 249          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 69/231 (29.87%), Postives = 104/231 (45.02%), Query Frame = 3
Query:   27 WSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            + L G  ALVTG +  IG A    L   GAIV        +L+    E    G +V     +L++R++ + L +   +  +G ++IL+NNA I      + +   D   V   N  ++F L++          NG I+ ++SV G  G P  + Y A K  M   +K+LA E A  NI  N VAP  I+++M        +     + I    PI R G   EV+S V  L
Sbjct:    2 FELTGRKALVTGASGAIGGAIARVLHAQGAIVGLHGTQIEKLETLATE---LGDRVKLFPANLANRDEVKALGQRAEADLEG-VDILVNNAGITKDGLFLHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQK-----EKIMVAIPIHRMGTGTEVASAVAYL 223          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_BUCBP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 66/221 (29.86%), Postives = 105/221 (47.51%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAI-VHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSL 707
            A++TG  RG+G    EEL+    I V   S +Q          KN G    G   D+++  +  K ++ V   F G+++ILINNA I   K  +++  +D ++V + N  S+F++S+        +  G I+ I SV    G    + Y A K  +    K+LA E A   I  N +AP +IKT M     +  + S++L  I    P+ R G   E+S +
Sbjct:    8 AVITGANRGLGKGIAEELSNTNNITVIGTSTSQKGCKIINKYLKNNGI---GIKLDITNPNEITKTMDFVYKNF-GRVDILINNAGIIRDKLLINMKTQDWNSVLNVNLNSIFYMSKSVIRNMIKNKQGKIITIGSVIAHIGNCGQTNYSAAKLGLVGFHKSLALELAPKGITVNMIAPGLIKTGMTNNLSQ-KQLSKYLSKI----PMKRLGTIKEISKI 219          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 62/229 (27.07%), Postives = 98/229 (42.79%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGAIVHT----CSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            +VTG +RGIG A    L + G  V       ++   E+  ++ E+  +     G   D+S     + +++T    + G +++++NNA I      + +       V   N   VF  +Q A  +      G I+ I+SV G+ G    + Y A K  +   +K  A E A  NI  N V P  I + M     E  E       I    P+GR G+P+ V+ LV  L L
Sbjct:   78 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGEAITFGG---DVSKEADVDSMMKTAVDKW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYGQPEYVAGLVEFLAL 297          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 61/226 (26.99%), Postives = 99/226 (43.81%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            +VTG +RGIG A    L + G  ++   +R+  E +    + +  G +      D+S     + +++T    + G +++++NNA I      + +       V   N   VF  +Q A  +      G I+ I+SV G+ G    + Y A K  +   +K  A E A  NI  N V P  I + M     E  E       I    P+GR G+P++V+ LV  L L
Sbjct:   89 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEQVSKQIEAYGGQAITFGGDVSKEADVDAMMKTAVDAW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYGQPEDVAGLVEFLAL 308          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB12_MACFA (Estradiol 17-beta-dehydrogenase 12 OS=Macaca fascicularis GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 61/196 (31.12%), Postives = 100/196 (51.02%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKV-TGSVC-DLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTV----SSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTGGT GIG +  EELA+ G  V   SR+Q +LD    E K K FKV T ++  D +  +  +K+    T +   ++ IL+NN  +++  P   +   D+  V     + N  SV  ++QL  P       G+I+ ISS  G+  +P +++Y A K  ++  ++ L  E+    I   +V P+ + T + K
Sbjct:   50 GEWAVVTGGTDGIGKSYAEELAKRGMKVVLISRSQDKLDQVSSEIKEK-FKVETRTIAVDFTLEDIYDKI---KTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMFPVPLLTIYSATKTFVDFFSQCLHEEYRSKGIFVQSVLPYFVATKLAK 241          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ARDH_PICST5.620e-1326.69D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
DHRS1_HUMAN7.339e-1327.14Dehydrogenase/reductase SDR family member 1 OS=Hom... [more]
DHK2_STRVN7.339e-1328.95Granaticin polyketide synthase putative ketoacyl r... [more]
DHG2_BACSU7.339e-1328.57Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
DECR2_RAT7.339e-1329.57Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
NODG_RHIME9.586e-1329.87Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]
FABG_BUCBP9.586e-1329.863-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
FABG5_BRANA9.586e-1327.073-oxoacyl-[acyl-carrier-protein] reductase 5, chlo... [more]
FABG2_BRANA9.586e-1326.993-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
DHB12_MACFA9.586e-1331.12Estradiol 17-beta-dehydrogenase 12 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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