CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 59/199 (29.65%), Postives = 90/199 (45.23%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPL--------FKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMI 605
            L+G  A+VTGG RGIG A V   A+ GA V     +    +A        G +V+   CD+S  +   + ++   S   G+L++  NNA +   +      A  + +  +  F+ V  ++ L   L              GSIV ++SV  V G      Y A K A+  LTKN ACE     +R N V+P+ + T M+
Sbjct:   53 LDGKVAIVTGGARGIGEAIVRLFAKHGARVVIADIDDAAGEALASAL---GPQVSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRA---ARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPML 245          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_BUCAI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 66/229 (28.82%), Postives = 104/229 (45.41%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGK--LNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLV 710
            ++N  TA +TG  +GIG A  ++L + G  V   S  +  +       +  GF   G V +L + +    + E +  I++ K  ++ILINNA I      V++ + +   V  TN  SVFHL +           G I+ I SV    G      Y A K  +    K+LA E A   I  N V+P +IKT+  +      +  ++L  I    P+ R G+ +EV+  V
Sbjct:    2 NINRQTAFITGANQGIGKAIAKKLIKKGIQVIGTSTTEDGVKRINDYLEGNGF---GFVLNLKNIDS---ITEKIQEIYKKKHSIDILINNAGIKEDNLLVNMKSTEWDDVIKTNLSSVFHLVKSVIRSMIKKRQGRIITIGSVIAYTGNKGQVNYSASKSGLIGFHKSLALEVASKGITVNIVSPGLIKTNFTEKL-NSIQYQKYLSNI----PMKRFGQKEEVADAV 219          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 62/229 (27.07%), Postives = 99/229 (43.23%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGAIVHT----CSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCL 725
            +VTG +RGIG A    L + G  V       ++   E+  ++ E+  +     G   D+S     + +++T    + G +++++NNA    +   + +       V   N   VF  SQ A  +      G I+ I+SV G+ G    + Y A K  +   +K  A E A  NI  N V P  I + M     E  E       I    P+GR G+P++V+ LV  L L
Sbjct:   18 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGQAITFGG---DVSKEADVDAMMKTAVDKW-GTIDVVVNNAGDTLL---IRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYGQPEDVAGLVEFLAL 234          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB12_HUMAN (Estradiol 17-beta-dehydrogenase 12 OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 59/196 (30.10%), Postives = 100/196 (51.02%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKV-TGSVC-DLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTV----SSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTG T GIG +  EELA+ G  V   SR++ +LD    E K K FKV T ++  D +S +  +K+    T +   ++ IL+NN  +++  P   +   D+  V     + N  SV  ++QL  P       G+I+ ISS  G+  +P +++Y A K  ++  ++ L  E+    +   +V P+ + T + K
Sbjct:   50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEK-FKVETRTIAVDFASEDIYDKI---KTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAK 241          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB12_BOVIN (Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 54/196 (27.55%), Postives = 97/196 (49.49%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGS--VCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMST----VSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            G  A+VTGGT GIG +  EELA+ G  +   SR+Q +LD    E   K FKV       D +S +  +K+  ++  +    + +L+NN  +++  P   +   D+      + + N  SV  +++L  P       G+I+ ISS  G+  +P +++Y A K  ++  ++ L  E+    +   +V P+ + T + K
Sbjct:   50 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEK-FKVETKTIAVDFTSEDIYDKIKASLAGL---NIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAK 241          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: ARDH_CANAL (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida albicans GN=ARD1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRN--QIELDAR-LHEWKNKGFK---------VTGSVCDLSSREQREKLIETVTSIFQGKLN-ILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQ-LAHPLFKASGNGSIVFISSVGG--VRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDE 695
            L+G   ++TGG+ G+       L   GA V     N  + +  AR + +W  +  K         V+   C++   E  +   + +     GK++ +L+N A  A   P  +  A++   +   N    F++SQ  A PL + +  GSI+ I S+ G  V       +Y   K  +  L ++LACEWAK NIR NT++P  I T + +    G   +E       + P+ R  EP E
Sbjct:   17 LDGKLVILTGGSGGLAAVVSRALLAKGADVALVDMNLERTQQAARDVLQWGEEQMKGKYESPIGQVSAWSCNIGDAEAVDLTFKAINE-HHGKISSVLVNTAGYAENFPAEEYPAKNAENLMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISG--HTEMKTEWESKIPMKRMAEPKE 250          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 51/187 (27.27%), Postives = 78/187 (41.71%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIK 608
            ALVTG   GIG     E AR GA V          +    +   +GF       D++   Q    +  +   + G+L+IL+NNA I  V P  +   +    +      + F   +   P+ K    G I+ I+SV G+ G    S Y + K  +  LTK  A E A   I  N + P  + T +++
Sbjct:    6 ALVTGAAGGIGFEIAREFAREGASVIVSDLRPEACEKAASKLAEEGFDAAAIPYDVTKEAQVADTVNVIQKQY-GRLDILVNNAGIQHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVR 191          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YAY8_SCHPO (Uncharacterized oxidoreductase C4H3.08 OS=Schizosaccharomyces pombe GN=SPAC4H3.08 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 68/223 (30.49%), Postives = 106/223 (47.53%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGA-IVHTC---SRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSS 704
            L+TGG  GIG A     AR G+ +V +C    R+  E+   L E + +   +     D S  +    L++       G +++L+NN A   V  ++ DI  E       TN  S F +++ A    K+    SIV  SS+    G P +  Y + KGA+   T+ L+ ++A+  IR N VAP  I T    P        E ++ ++ Q P+GR G+P EV+S
Sbjct:   46 LLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTRDLIEREGRNCWIWEGKLDKS--DNCRDLVDFALKKL-GWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSGS--SIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYT----PLVSSTFPKEKIE-LSDQVPLGRMGQPVEVAS 258          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 57/209 (27.27%), Postives = 97/209 (46.41%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIA 656
            SL     L+TG   G+G    +  A++GA V     +  +    + E K  G +      D++  +  E +I+ V   + G ++IL+NNA I   +    ++ ++  +V   +    F+LS+LA P F     G I+ I+S  G+ G    + Y + K  +  L+K +A E AK+NI+ N VAP       +  F E  +     D +A
Sbjct:  319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVV--NDFKDATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVIDKY-GTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMTLTIFREQDKNLYHADQVA 522          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 63/225 (28.00%), Postives = 97/225 (43.11%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQ-LAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEW-AKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            ++TGG+ G+G A  ++ A  G  V    RN   L+    E +    +V     D+ S      +I+     F G+L+ LINNAA  F+ P   +T      V        F  SQ  A         G I+ +++         V    A K  +  LT+ LA EW +K  IRTN +AP  I+ +     E+  E  + +       P+GR G P+E+++L   L
Sbjct:    7 IITGGSSGMGKAMAKKQAELGWHVMVTGRNHEALEETKKEIQTFEGQVACFQMDVRSDSAASDMIKEAVKAF-GRLDALINNAAGNFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARHWIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERT--GGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFL 228          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TS2_MAIZE1.635e-1229.65Sex determination protein tasselseed-2 OS=Zea mays... [more]
FABG_BUCAI1.635e-1228.823-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
FABG4_BRANA1.635e-1227.073-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
DHB12_HUMAN1.635e-1230.10Estradiol 17-beta-dehydrogenase 12 OS=Homo sapiens... [more]
DHB12_BOVIN1.635e-1227.55Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus G... [more]
ARDH_CANAL1.635e-1227.43D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
YXJF_BACSU2.135e-1227.27Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
YAY8_SCHPO2.789e-1230.49Uncharacterized oxidoreductase C4H3.08 OS=Schizosa... [more]
FOX2_CANTR2.789e-1227.27Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
FADH_BACSU2.789e-1228.00Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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