CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 51/164 (31.10%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  234 EKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLA-HPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            EKLI+ +     G++++L+NNA      P +D+  ++   + + + +  F  SQ+A   + K    G I+ I+SV     +P  S Y A K A+  LTK +A E  +  I  N VAP  I T M      G + S+         P+ R G   E++SLV  LC
Sbjct:   72 EKLIQRL-----GRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPM-----NGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLC 225          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y4EK_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4eK OS=Rhizobium sp. (strain NGR234) GN=NGR_a03840 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPT-VDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSE 638
            ALVTG + GIG A   ELA  G  V    R++  LD  LH        +   V DLS       + E    I   K+++L+NNA +     + VD++ +D+  +   N  SVF L++           G I F  S GG+   P+ S+YGA K A++  +  L C+     IR   + P  ++T++ +    G EG++
Sbjct:   10 ALVTGASSGIGKAIALELASAGLRVLALGRDRAALD-ELHSTAG----IVPVVFDLSD------VSEVYGKIAGEKIDVLVNNAGLLTASASLVDLSEDDIDAMIDINIRSVFKLTRHVLKQMIERRRGHIFFTGSSGGLAPHPNSSVYGATKAAVSLFSSALRCDLIGLPIRVTELFPGRVETNLYRT-ALGKEGAK 195          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YTKK_BACSU (Putative oxidoreductase ytkK OS=Bacillus subtilis GN=ytkK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 68/233 (29.18%), Postives = 105/233 (45.06%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHE----WKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAA--IAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVR--GIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            AL+T G++G+G    E L   G  V    R   E  +RL E      ++   V G   D++ +E   ++ E   + F G+++ LINNA   I   K   D T ++   +   N  +VFHL +   P+ +    G I+     G     G    S +GA K  +  LTK +A E A+  I  N V P  I   M    E   E +    G   +TPIGR+G  ++++ ++  LC
Sbjct:    4 ALITAGSKGLGRKVTETLLAKGYSVTVNYRQDEEAVSRLKEACPDCLDRLQFVKG---DVTKKEDLLRIAEAALNRF-GRIDFLINNAGPYIFERKKLADYTDDEWYGMLEGNLSAVFHLFKAVIPIMRKQQFGRIITYGFQGAAHAPGWLHRSAFGAAKVGLASLTKTIAIEEAEFGITANMVCPGDIVGDM---KEASIEEARMRIG-KEKTPIGRSGTGEDIARIIAFLC 228          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YGHA_ECOLI (Uncharacterized oxidoreductase yghA OS=Escherichia coli (strain K12) GN=yghA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 72/238 (30.25%), Postives = 106/238 (44.54%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDAR-----LHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCLQ 728
            L    ALVTGG  GIG A     AR GA V        E DA+     + E   K   + G   DLS  +    L+        G L+I+   A      P + D+T+E      + N  ++F L+Q A PL       SI+  SS+   +  P +  Y A K A+   ++ LA + A+  IR N VAP  I T++      G +  + +    +QTP+ RAG+P E++ +   L  Q
Sbjct:   47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG---DLSDEKFARSLVHEAHKAL-GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK--GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL---QISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQ 275          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YGHA_ECO57 (Uncharacterized oxidoreductase yghA OS=Escherichia coli O157:H7 GN=yghA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 72/238 (30.25%), Postives = 106/238 (44.54%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDAR-----LHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILCLQ 728
            L    ALVTGG  GIG A     AR GA V        E DA+     + E   K   + G   DLS  +    L+        G L+I+   A      P + D+T+E      + N  ++F L+Q A PL       SI+  SS+   +  P +  Y A K A+   ++ LA + A+  IR N VAP  I T++      G +  + +    +QTP+ RAG+P E++ +   L  Q
Sbjct:   47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG---DLSDEKFARSLVHEAHKAL-GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK--GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL---QISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQ 275          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB4_MOUSE (Peroxisomal multifunctional enzyme type 2 OS=Mus musculus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 56/191 (29.32%), Postives = 85/191 (44.50%), Query Frame = 3
Query:   36 NGMTALVTGGTRGIGHATVEELARFGAIVHT---------CSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAP 581
            +G   LVTG   G+G A     A  GA+V             +     D  + E + KG K   +V +  S E  EKL++T    F G++++++NNA I   +    I+ ED   +   +    F +++ A    K    G I+  SS  G+ G    + Y A K  +  L   LA E  K+NI  NT+AP
Sbjct:    8 DGRVVLVTGAGGGLGRAYALAFAERGALVIVNDLGGDFKGIGKGSSAADKVVAEIRRKGGK---AVANYDSVEAGEKLVKTALDTF-GRIDVVVNNAGILRDRSFSRISDEDWDIIHRVHLRGSFQVTRAAWDHMKKQNYGRILMTSSASGIYGNFGQANYSAAKLGILGLCNTLAIEGRKNNIHCNTIAP 194          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 63/226 (27.88%), Postives = 102/226 (45.13%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDIT-AEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAP---WVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSS 704
            G   +VTGG RGIG   V      GA V  C +++    A   E     F     +CD++  +  + L+      F G+L+ ++NNA         + T A+    +   N    + L++LA P  + S  G+++ ISS+ G  G      Y A KGA+  +TK LA + +   +R N ++P   W      +      P  +   +G+  Q P+GR G+P EV +
Sbjct:    9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVF----ILCDVTQEDDVKTLVSETIRRF-GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRAT-IREGMLAQ-PLGRMGQPAEVGA 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 68/231 (29.44%), Postives = 99/231 (42.86%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQ-----GKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLV 710
            L    A +TGG  GIG    E   R G       R+  ++         K    TG  C   S + R    E +T++ Q     GK+NILIN AA  F+ P   ++     TV   +    F++S + +  F     G IV I++   +RG       GA K A++ +T++LA EW   NIR N++AP  I  +       G   S  L   +   PI R G   E++  V
Sbjct:   26 LQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRSLQKVTTAA----KKLVAATGKRCLPLSMDVRVPP-EVMTAVDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIGTFNVSSVLYKKFFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQNIRVNSLAPGAISGTEGLRRLRGSNASSKLKHFS--NPIPRLGTKTEIAHSV 249          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YCP8_SCHPO (Uncharacterized oxidoreductase C663.08c OS=Schizosaccharomyces pombe GN=SPCC663.08c PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 55/208 (26.44%), Postives = 88/208 (42.31%), Query Frame = 3
Query:   54 VTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGI---PSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPF--EEGPEGSEFLDGIARQ 662
            + GG RGIG + V+EL+     V   S  +     +L EW      V     D+SS E   +  + VT +      + +N+A      P V+   +  ++   TN     H+ Q  +PL K   +  IVF SS+ G  G     S S YG  K A+N   K ++ E   +     ++ P  ++T   +    +   +  E LD  A+Q
Sbjct:   10 IAGGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKSHSNVHIIKLDVSSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLGPIHVYQAFYPLIKKGRSKIIVFTSSLAGSMGAFFPSSQSAYGQSKAALNYTMKEISFELQDEGFIVISIHPGAVRTDSAQEIVNQHAEKKPEILDLFAKQ 217          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: HCDS_XANP2 (2-(S)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecE PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 65/227 (28.63%), Postives = 94/227 (41.41%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQ---GKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIK-TSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVS 701
            L+     +TGG  GIG A      R GA V    R+         E+    + V   V D       E  I    +  Q   G L  L+NNA IA          E  S + + N    F  S+ A       G G+IV   SV G+ GIP+++ Y A KGA+  LT+ +A +++   IR N V P  +  T M +         E       + P+GR G P++++
Sbjct:    2 LDAEVIAITGGAAGIGLAVAHAAIRAGARVALIDRDGACAQRAAAEFGAAAWGVGADVTD-------EAAITAAMAGAQRALGPLTGLVNNAGIAGFGSVHATEVETWSRIMAVNVTGTFLASKAALFGMLERGRGAIVNFGSVAGLVGIPTMAAYCAAKGAVVNLTRQMAADYSGRGIRVNVVCPGTVAGTDMGRQLLGTDCDPELEARRLAKYPMGRFGTPEDIA 221          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
YOHF_ECOLI3.643e-1231.10Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
Y4EK_RHISN3.643e-1230.30Uncharacterized short-chain type dehydrogenase/red... [more]
YTKK_BACSU4.757e-1229.18Putative oxidoreductase ytkK OS=Bacillus subtilis ... [more]
YGHA_ECOLI4.757e-1230.25Uncharacterized oxidoreductase yghA OS=Escherichia... [more]
YGHA_ECO574.757e-1230.25Uncharacterized oxidoreductase yghA OS=Escherichia... [more]
DHB4_MOUSE4.757e-1229.32Peroxisomal multifunctional enzyme type 2 OS=Mus m... [more]
DHB14_HUMAN4.757e-1227.8817-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
DECR2_MOUSE4.757e-1229.44Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
YCP8_SCHPO6.213e-1226.44Uncharacterized oxidoreductase C663.08c OS=Schizos... [more]
HCDS_XANP26.213e-1228.632-(S)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
back to top