CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y1570_MYCBO (Uncharacterized oxidoreductase Mb1570 OS=Mycobacterium bovis GN=Mb1570 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 59/205 (28.78%), Postives = 95/205 (46.34%), Query Frame = 3
Query:   15 RNKRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKN-KGFKVTGSV--CDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAE---DMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKP 611
            RN   ++ G   L+TGG+ GIG A  +++A  G  V   +R    L+   ++ +  +G   T  V  CDLS  +    + + V     G ++ILINNA  + ++ +++++ +   D       N+     L     P  +    G IV +SSVG     P    Y A K A++ L   L  E   DN+R  TV   +++T MI P
Sbjct:   45 RNLNDAVKGKVVLITGGSSGIGAAAAKKIAEAGGTVVLVARTLENLENVANDIRAIRGNGGTAHVYPCDLSDMDAIAVMADQVLGDLGG-VDILINNAGRS-IRRSLELSYDRIHDYQRTMQLNYLGAVQLILKFIPGMRERHFGHIVNVSSVGVQTRAPRFGAYIASKAALDSLCDALQAETVHDNVRFTTVHMALVRTPMISP 247          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y1543_MYCTU (Uncharacterized oxidoreductase Rv1543/MT1595 OS=Mycobacterium tuberculosis GN=Rv1543 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 59/205 (28.78%), Postives = 95/205 (46.34%), Query Frame = 3
Query:   15 RNKRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKN-KGFKVTGSV--CDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAE---DMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKP 611
            RN   ++ G   L+TGG+ GIG A  +++A  G  V   +R    L+   ++ +  +G   T  V  CDLS  +    + + V     G ++ILINNA  + ++ +++++ +   D       N+     L     P  +    G IV +SSVG     P    Y A K A++ L   L  E   DN+R  TV   +++T MI P
Sbjct:   45 RNLNDAVKGKVVLITGGSSGIGAAAAKKIAEAGGTVVLVARTLENLENVANDIRAIRGNGGTAHVYPCDLSDMDAIAVMADQVLGDLGG-VDILINNAGRS-IRRSLELSYDRIHDYQRTMQLNYLGAVQLILKFIPGMRERHFGHIVNVSSVGVQTRAPRFGAYIASKAALDSLCDALQAETVHDNVRFTTVHMALVRTPMISP 247          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DLTE_BACSU (Uncharacterized oxidoreductase dltE OS=Bacillus subtilis GN=dltE PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 54/190 (28.42%), Postives = 86/190 (45.26%), Query Frame = 3
Query:   45 TALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIA----FVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM 602
            T L+TGG+ GIG    + L   G  V  C R+    +ARL E K +   +    CD++ R QRE L E     +   LN+L+NNA I     F K T ++  +        NF++  HLS L  P        +IV ++S      +    +Y A K A++  +  L  +    ++    +AP ++ T +
Sbjct:    7 TVLITGGSAGIGLELAKRLLELGNEVIICGRS----EARLAEAKQQLPNIHTKQCDVADRSQREALYEWALKEYP-NLNVLVNNAGIQKEIDFKKGTEELFVD--GDEIELNFQAPVHLSALFTPHLMKQPEAAIVQVTSGLAFNPLAVYPVYCATKAALHSFSLTLRHQLRDTSVEVIEMAPPMVDTGL 189          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
Y1570_MYCBO8.972e-1128.78Uncharacterized oxidoreductase Mb1570 OS=Mycobacte... [more]
Y1543_MYCTU8.972e-1128.78Uncharacterized oxidoreductase Rv1543/MT1595 OS=My... [more]
DLTE_BACSU8.972e-1128.42Uncharacterized oxidoreductase dltE OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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