CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: CMTB_PSEPU (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida GN=cmtB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 74/232 (31.90%), Postives = 106/232 (45.69%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNK-GFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM-IKPFEEGPE-GSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G  A+VTGG  GIG   VE L   GA V     ++  L         K    +     DLS  +  + L       F G + IL+N A    ++P ++ T E +      N  +    S++  P   A   G I+ I +     G+P  + Y A KG M+ LT  LA E+A+  +  NTVAP  + T + ++     PE    FLD I    P+GR GE +EV+S+VG L
Sbjct:   11 LEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLLCERLAAKHADAIAVHAADLSEEQGAQGLHRAAVERF-GSVQILVNCAGGGVIRPFLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVRIKNANPELAQRFLDVI----PMGRVGEIEEVASMVGYL 237          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: CMTB_PSEP1 (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cmtB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 74/232 (31.90%), Postives = 106/232 (45.69%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNK-GFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSM-IKPFEEGPE-GSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G  A+VTGG  GIG   VE L   GA V     ++  L         K    +     DLS  +  + L       F G + IL+N A    ++P ++ T E +      N  +    S++  P   A   G I+ I +     G+P  + Y A KG M+ LT  LA E+A+  +  NTVAP  + T + ++     PE    FLD I    P+GR GE +EV+S+VG L
Sbjct:   11 LEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLLCERLAAKHADAIAVHAADLSEEQGAQGLHRAAVERF-GSVQILVNCAGGGVIRPFLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVRIKNANPELAQRFLDVI----PMGRVGEIEEVASMVGYL 237          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 79/238 (33.19%), Postives = 119/238 (50.00%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIV-HTCSRNQIELDAR-----LHEWKNK-GFKVTGSV-CDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLAHPLFK------ASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVS 701
            L    A+VTGG  GIG A     A  GA V  T  + Q E DA      L + + + G K   ++  DL   +   K+++ V   + G ++IL+NNAA  + +P++ DIT +D+  V  TN  S F +S+ A    +       +G  SI+  SS+   +G  ++  Y A KGA+   T+ LA + A++ IR N VAP  I T +I          E +     Q P+GRAG+P EV+
Sbjct:   38 LKDKVAIVTGGDSGIGRAVCLCFALEGATVAFTYVKGQEEKDAEETLRALRDIRARTGAKDPMAIPADLGYDDNCRKVVDEVAGAYGGAIDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRRGGAGAGGCSIINTSSINAYKGNKTLLDYTATKGAIVAFTRALALQLAEEGIRVNGVAPGPIWTPLI----PASFAEEKVRQFGSQVPMGRAGQPSEVA 271          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 69/233 (29.61%), Postives = 113/233 (48.50%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSV-GGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPF--EEGPEGSE-FLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G TAL+TG  +GIG       AR GA +     +  E++    E   +G + T  V D+         I+      +G+++IL+NNA +  +   +D++ +D       N + V+++++   P   A  +G IV +SSV G +   P  + Y   K A+  LTK+LA E+A+  IR N + P  ++T M +    +  PE  E  L  +A+  P+ R  +P EV  L   L
Sbjct:    4 LTGKTALITGALQGIGEGIARTFARHGANLILLDISP-EIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE-KEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFL 234          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 69/233 (29.61%), Postives = 113/233 (48.50%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSV-GGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPF--EEGPEGSE-FLDGIARQTPIGRAGEPDEVSSLVGIL 719
            L G TAL+TG  +GIG       AR GA +     +  E++    E   +G + T  V D+         I+      +G+++IL+NNA +  +   +D++ +D       N + V+++++   P   A  +G IV +SSV G +   P  + Y   K A+  LTK+LA E+A+  IR N + P  ++T M +    +  PE  E  L  +A+  P+ R  +P EV  L   L
Sbjct:    4 LTGKTALITGALQGIGEGIARTFARHGANLILLDISP-EIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE-KEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFL 234          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FIXR_BRAJA (Protein fixR OS=Bradyrhizobium japonicum GN=fixR PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 76/237 (32.07%), Postives = 113/237 (47.68%), Query Frame = 3
Query:   51 LVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWK---NKGFKVTGSVCDLSSREQREKLIETVTSIFQG-KLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASG--------NGSIVFISSVGGVRGIP-SVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGILC 722
            L+TG +RGIGHAT +  +  G  + +C+R     D     W+   +  F+V     DL       + I  V     G  L+ L+NNA ++   PT D       T S+  +  VFHL+ +A P+  A G        +GSIV ++S+ G R  P + S Y   K A+  LT+ LA ++A   IR N +AP  I+T M+ P  E          +    P+ R G PDEV+ ++  LC
Sbjct:   40 LLTGASRGIGHATAKLFSEAGWRIISCARQ--PFDGERCPWEAGNDDHFQV-----DLGDHRMLPRAITEVKKRLAGAPLHALVNNAGVSPKTPTGDRMTS--LTTSTDTWMRVFHLNLVA-PILLAQGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDMLSPDAEA--------RVVASIPLRRVGTPDEVAKVIFFLC 258          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 3
Query:   12 RRNKRWSLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTN 569
            R  +R  L    ALVT  T GIG A    LA+  A V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+     +  G ++IL++NAA+  F    +D+T E        N ++   +++   P  +  G GS+V +SS+      P  S Y   K A+  L   LA E A  NIR N
Sbjct:   21 RMTRRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKL-HGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVN 206          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: YXEK_CAEEL (Uncharacterized oxidoreductase F53C11.3 OS=Caenorhabditis elegans GN=F53C11.3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVC-----DLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLS-QLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFL-------DGIARQTPIGRAGEPDEVSSLVGIL 719
            SLNG  ALVTGG  G+G A     A  GA V   +R    L+    E ++     TG VC     D+    +  K  + V        +ILINNAA  F+  T  ++     T+     +   H++ +L     +     S++ I+++    G P V      K  +  +TK+LA EWAK  +R N +AP  I T       EG  G  F        D +    P+GR G P+E+++L   +
Sbjct:   23 SLNGKVALVTGGGTGLGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSS----TGGVCEPFQMDVKDPAKVAKAFDAVEKKLGHTPDILINNAAGNFIMATERLSPNAYGTIIDIVLKGTLHVTTELGRRCIQQKRGASVLSITTLYAQSGAPFVVPSAVSKAGVENMTKSLASEWAKHGLRFNAIAPGPIPT-------EGAFGRLFAGELKDSGDAMKASVPVGRLGHPEEIANLAAFM 254          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 78/234 (33.33%), Postives = 112/234 (47.86%), Query Frame = 3
Query:   33 LNGMTALVTGGT--RGIGHATVEELARFGAIVHTCSRNQIELDARLHEWK--NKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSV-----GGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSL 707
            L G TA+++G    RGIG AT E  A  GA V     N  E  A   +      G  + G  CD++ R       + V S F G  NILINNA I     T+DI+  D   + + N   V +LSQ+  P  + +G GSI  +SSV     GG+ G P    Y A K  +  L K +A E+  D+IR N V P +I+T +          ++ + GI    P+ R G+  +V+++
Sbjct:    3 LKGKTAVISGAASKRGIGRATAELFASHGARVAILDINADEAKAAAGDLPPVEHGAHI-GLRCDVADRASCTSASDEVLSAF-GVANILINNAGITQPVKTLDISDADWQRIVAVNMTGVLNLSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGPH---YSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDITGDKLSAEMRADIVKGI----PLSRLGDARDVANI 227          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFG-AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            +L    ALVTG +RGIG AT   LA  G  +V   +++    DA + E    G +      ++++ ++ ++LI+T    F  ++++L+NNA I      + +  ED   V   N   VF  ++    L     +G I+ I+SV G+ G P  + Y A K  +   TK +A E A   +  N VAP  I T M +     P        I +  P+ R G+P+EV+  +  L
Sbjct:    3 ALTAQVALVTGASRGIGKATALALAATGMKVVVNYAQSSTAADAVVAEIIANGGEAIAVQANVANADEVDQLIKTTLDKF-SRIDVLVNNAGITRDTLLLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAEP--------ILQFIPLARYGQPEEVAGTIRFL 224          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
CMTB_PSEPU3.076e-1931.902,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
CMTB_PSEP13.076e-1931.902,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
GRDH_ORYSJ4.018e-1933.19Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
UCPA_ECO575.248e-1929.61Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
UCPA_ECOLI6.854e-1929.61Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]
FIXR_BRAJA6.854e-1932.07Protein fixR OS=Bradyrhizobium japonicum GN=fixR P... [more]
DR4L2_HUMAN6.854e-1933.16Dehydrogenase/reductase SDR family member 4-like 2... [more]
YXEK_CAEEL1.169e-1829.22Uncharacterized oxidoreductase F53C11.3 OS=Caenorh... [more]
Y4MP_RHISN1.169e-1833.33Uncharacterized short-chain type dehydrogenase/red... [more]
FABG1_SYNY31.527e-1829.443-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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