CX300573

Overview
NameCX300573
Unique NameCX300573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig846 contig Ccv1_Contig846:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: MTDH_AGABI (NADP-dependent mannitol dehydrogenase OS=Agaricus bisporus GN=mtdH PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 66/230 (28.70%), Postives = 110/230 (47.83%), Query Frame = 3
Query:   45 TALVTGGTRGIGHATVEELARFG---AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLF-KASGNGSIVFISSV-------GGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVS 701
            T +VTGG RGIG A    +A  G   A+++  +++ +E+  ++   K  G K     CD+S+ +   K I+ + +   G ++ LI NA ++ VKP  ++T ED   V   N   VF+  +    L+ +    GSIV  SS+         + G  +   Y + K A + L K LA EWA   IR N ++P  + T      ++     +  D  A   P+ R  +P+E++
Sbjct:   13 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAKDAVEVTEKV--GKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL-GAISGLIANAGVSVVKPATELTHEDFKFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDK-----KIRDHQASNIPLNRFAQPEEMT 234          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 75/225 (33.33%), Postives = 111/225 (49.33%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIE-LDARLHEWKNKGFKVTGSVCDLSSREQREKLIE-TVTSIFQGKLNILINNAAIAFVKPTV-DITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMI-KPFEEGPEGSEFLDGIARQTPIGRAGEPDE 695
            L G  AL+TGG  GIG A     A+ GA +    +++ E  +      + +G K      D+   E   + +E TV  +  G L+IL+NNA     K ++ DIT+E +     TNF S F+L++ A    K     +I+  +S+    G P++  Y A KGA+N  T+ +A    KD IR N VAP  I T +I   F E     E +    + TP+GR G+P E
Sbjct:   40 LKGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFCNEAVEKTVKEL--GGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGS--AIINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPE-----ETVAQFGQDTPMGRPGQPVE 255          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 83/240 (34.58%), Postives = 119/240 (49.58%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIV-HTCSRNQIELDAR-----LHEWKNKGFKVTGSV-CDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVD-ITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMI-KPFEEGPEGSEFLDGIARQTPIGRAGEPDEVS-SLVGILC 722
            L G  AL+TGG  GIG A     A  GA V  T  + Q E DA+     L E K    K   ++  DL   E  +++++ V + F G++++LINNAA  +   T++ I    +  V  TN  S F L++  H L       SI+  +SV   +G  S+  Y A KGA+   T+ LA + A+  IR N VAP  I T +I   F E     E +     + P+ RAG+P EV+ S V + C
Sbjct:   35 LRGKVALITGGDSGIGRAVGYCFASEGATVAFTYVKGQEEKDAQETLQMLKEVKTSDSKEPIAIPTDLGFDENCKRVVDEVVNAF-GRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTR--HALKHMKEGSSIINTTSVNAYKGNASLLDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNE-----EKIKNFGSEVPMKRAGQPIEVAPSYVFLAC 266          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            S  G  ALVTG +RGIG A  E L   GA V   + ++   +   +     G    G + +++     E ++E + + F G+++IL+NNA I      + +  ++ + +  TN  SVF LS+           G I+ I SV G  G    + Y A K  +   +K+LA E A   I  N VAP  I+T M +   +         GI  Q P GR G   E++S V  L
Sbjct:    2 SFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSE---NGAKNISDYLGANGKGLMLNVTDPASIESVLENIRAEF-GEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRA-----GILAQVPAGRLGGAQEIASAVAFL 222          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 3
Query:   30 SLNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            S  G  ALVTG +RGIG A  E L   GA V   + ++   +   +     G    G + +++     E ++E + + F G+++IL+NNA I      + +  ++ + +  TN  SVF LS+           G I+ I SV G  G    + Y A K  +   +K+LA E A   I  N VAP  I+T M +   +         GI  Q P GR G   E++S V  L
Sbjct:    2 SFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSE---NGAKNISDYLGANGKGLMLNVTDPASIESVLENIRAEF-GEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRA-----GILAQVPAGRLGGAQEIASAVAFL 222          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: CBR4_DANRE (Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 73/218 (33.49%), Postives = 102/218 (46.79%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVS 701
            A+V GG+RGIG A  + LA+ G  +   SRN+    +       +     G  CD+S  E+ +K  ET+     G +  L+N A I      +   +EDM +V  TN        + A     + G G+IV I SV GV+G     +Y A K  +   T++LA E A  NIR N VAP +I T M     E        +   R  P+GR GEP EV+
Sbjct:    5 AVVFGGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGENH--LGLSCDVSKEEEVQKAFETINKTC-GTVGFLVNAAGINRDALLLRSKSEDMLSVLHTNLLGSMLTCKAAVRNMLSHG-GAIVNIGSVVGVKGNAGQCVYSASKAGLEGFTRSLAKEVASRNIRVNLVAPGLIHTDMTAGLAE--------EAAVRTIPLGRFGEPAEVA 210          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 70/231 (30.30%), Postives = 102/231 (44.16%), Query Frame = 3
Query:   39 GMTALVTGGTRGIGHATVEELARFGAIVHTCS---RNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIA-FVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            G   +VTG   GIG A V+  A  G +V          IEL   L E  + G +V        SRE     +  +      ++ +L+NNA I   +  T D   ED     + N    + ++     L K     +IV ++S+ G+ G P  S Y A K  +  +TK+LAC WA   IR   VAP  ++T M+   E    G   +  I R+ P+GR   PDE++  V  L
Sbjct:    9 GRVIVVTGAAGGIGRALVDIFAANGDVVVAVDLPDSGVIELGQNLGE-PHLGLEVD------VSREDDVVALRALLEKRFSRIEVLVNNAGIGPTMAATADTALEDFQRALAINLVGAYSVACETAKLMKPGA--AIVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELERA--GKLDVSAIRRRVPLGRIARPDEIARAVRFL 228          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 69/231 (29.87%), Postives = 111/231 (48.05%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSV--CDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            LN  TA++TGG +G+G A  +     GA V       + L+A     K  G         CD++  +  + LI T    F G L++++NNA I        +T E    V + + +  ++ ++LA  + +    G+IV +SSV G  G+   + Y A K  +  +TK  A E A   IR N +AP +I+++M +   +        D    + P+GRAGEP EV+S+   L
Sbjct:    5 LNARTAVITGGAQGLGLAIGQRFVAEGARVVL---GDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGG-LDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQ-----RIWDQKLAEVPMGRAGEPSEVASVAVFL 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 69/231 (29.87%), Postives = 111/231 (48.05%), Query Frame = 3
Query:   33 LNGMTALVTGGTRGIGHATVEELARFGAIVHTCSRNQIELDARLHEWKNKGFKVTGSV--CDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            LN  TA++TGG +G+G A  +     GA V       + L+A     K  G         CD++  +  + LI T    F G L++++NNA I        +T E    V + + +  ++ ++LA  + +    G+IV +SSV G  G+   + Y A K  +  +TK  A E A   IR N +AP +I+++M +   +        D    + P+GRAGEP EV+S+   L
Sbjct:    5 LNARTAVITGGAQGLGLAIGQRFVAEGARVVL---GDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGG-LDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQ-----RIWDQKLAEVPMGRAGEPSEVASVAVFL 226          
BLAST of CX300573 vs. ExPASy Swiss-Prot
Match: FABL_BACSU (Enoyl-[acyl-carrier-protein] reductase [NADPH] OS=Bacillus subtilis GN=fabL PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 64/225 (28.44%), Postives = 109/225 (48.44%), Query Frame = 3
Query:   48 ALVTGGTRGIGHATVEELARFGA-IVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNLACEWAKDNIRTNTVAPWVIKTSMIKPFEEGPEGSEFLDGIARQTPIGRAGEPDEVSSLVGIL 719
            ALVTG +RG+G A    LA  G  IV   +R++        E +  G KV     ++    + +++ + +   F G+L++ +NNAA   ++P +++         + N +++   +Q A  L + +G G IV ISS+G +R + + +  G  K A+  LT+ LA E +   I  N V+   I T  +K F   P   + L+   + TP GR  E  ++   V  L
Sbjct:    7 ALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF-GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHF---PNREDLLEDARQNTPAGRMVEIKDMVDTVEFL 227          
The following BLAST results are available for this feature:
BLAST of CX300573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MTDH_AGABI9.896e-1828.70NADP-dependent mannitol dehydrogenase OS=Agaricus ... [more]
GS39_BACSU9.896e-1833.33General stress protein 39 OS=Bacillus subtilis GN=... [more]
GRDH1_ARATH9.896e-1834.58Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
FABG_SALTY9.896e-1830.433-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI9.896e-1830.433-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
CBR4_DANRE9.896e-1833.49Carbonyl reductase family member 4 OS=Danio rerio ... [more]
Y4VI_RHISN1.293e-1730.30Uncharacterized short-chain type dehydrogenase/red... [more]
Y1385_MYCBO1.293e-1729.87Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU1.293e-1729.87Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
FABL_BACSU1.293e-1728.44Enoyl-[acyl-carrier-protein] reductase [NADPH] OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07011G12SK SaltLeaf1 Citrus clementina cDNA clone C07011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300573 ID=CX300573; Name=CX300573; organism=Citrus clementina; type=EST; length=729bp
AAGAGCTCATTCGTAGAAACAAAAGATGGTCTCTCAATGGAATGACTGCT
TTAGTCACTGGAGGAACCCGAGGCATAGGGCATGCTACTGTAGAAGAATT
AGCAAGATTTGGAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGC
TCGATGCACGTTTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGG
TCAGTATGTGACCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGAC
TGTCACCTCCATCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTG
CAATAGCTTTCGTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCA
ACTGTAAGCAGCACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGC
ACATCCTCTGTTTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCT
CTGTTGGGGGCGTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATAC
AAAGGAGCCATGAATCAACTAACGAAGAATTTGGCATGCGAGTGGGCAAA
GGATAACATCCGTACTAATACAGTTGCACCCTGGGTTATTAAAACCTCAA
TGATCAAACCTTTTGAGGAAGGTCCTGAAGGAAGTGAATTTCTGGATGGA
ATAGCACGTCAAACACCCATCGGTCGAGCTGGAGAGCCTGATGAGGTTTC
TTCATTGGTGGGCATTCTTTGCCTTCAGC
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