CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.969e-15
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   15 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 69

HSP 2 Score: 32.7278 bits (73), Expect = 2.969e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   68 GNASKDLKVKRITPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.855e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 3.855e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2AV_STRPU	2.969e-15	65.45	Histone H2A.V (Fragment) OS=Strongylocentrotus pur...	[more]
H2AZ_SHEEP	3.855e-15	65.45	Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3	[more]
H2AZ_RAT	3.855e-15	65.45	Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S...	[more]
H2AZ_PONAB	3.855e-15	65.45	Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3	[more]
H2AZ_ONCMY	3.855e-15	65.45	Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1...	[more]
H2AZ_MOUSE	3.855e-15	65.45	Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2	[more]
H2AZ_HUMAN	3.855e-15	65.45	Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2	[more]
H2AZ_CHICK	3.855e-15	65.45	Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3	[more]
H2AZ_BOVIN	3.855e-15	65.45	Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2	[more]
H2AV_XENTR	5.011e-15	65.45	Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG