CX300627
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.781e-17 Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 PVSRSSRAGLQFPVGR+HR LK+ Y+AAILEYLTAEVLELAGN Sbjct: 29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGN 84 HSP 2 Score: 32.7278 bits (73), Expect = 9.781e-17 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 83 GNASKDLKVKRITPRHL 99
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 9.788e-17 Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 P++RSSRAGLQFPVGRVHRLLK YTAAILEYLTAEVLELAGN Sbjct: 26 PITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGN 81 HSP 2 Score: 31.187 bits (69), Expect = 9.788e-17 Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRI+PRHL Sbjct: 80 GNASKDLKVKRISPRHL 96
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.653e-16 Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 2 Query: 50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 PVSRSSRAG+QFPVGR+HR LK YTAAILEYLTAEVLELAGN Sbjct: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGN 86 HSP 2 Score: 32.7278 bits (73), Expect = 1.653e-16 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 85 GNASKDLKVKRITPRHL 101
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.653e-16 Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 2 Query: 50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 PVSRSSRAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGN Sbjct: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGN 85 HSP 2 Score: 32.7278 bits (73), Expect = 1.653e-16 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 84 GNASKDLKVKRITPRHL 100
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 6.151e-16 Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 2 Query: 53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 ++RSSRAGLQFPVGR+HRLLK YTAAILEYLTAEVLELAGN Sbjct: 18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGN 72 HSP 2 Score: 31.187 bits (69), Expect = 6.151e-16 Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRI+PRHL Sbjct: 71 GNASKDLKVKRISPRHL 87
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 6.151e-16 Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 2 Query: 53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 ++RSSRAGLQFPVGR+HRLLK YTAAILEYLTAEVLELAGN Sbjct: 18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGN 72 HSP 2 Score: 31.187 bits (69), Expect = 6.151e-16 Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRI+PRHL Sbjct: 71 GNASKDLKVKRISPRHL 87
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 7.971e-16 Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 2 Query: 53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 VSRS+RAGLQFPVGR+HR LK+ Y+AAILEYLTAEVLELAGN Sbjct: 20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGN 74 HSP 2 Score: 32.7278 bits (73), Expect = 7.971e-16 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 73 GNASKDLKVKRITPRHL 89
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.983e-16 Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 2 Query: 50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 P+SRS+RAG+QFPVGR+HR LK YTA+ILEYLTAEVLELAGN Sbjct: 28 PISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGN 83 HSP 2 Score: 32.7278 bits (73), Expect = 7.983e-16 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 82 GNASKDLKVKRITPRHL 98
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.038e-15 Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 2 Query: 53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 +SRSSRAG+QFPVGR+HR LK+ YTA+ILEYLTAEVLELAGN Sbjct: 29 ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGN 83 HSP 2 Score: 32.7278 bits (73), Expect = 1.038e-15 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 82 GNASKDLKVKRITPRHL 98
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 2.957e-15 Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 2 Query: 53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217 VSRS+RAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGN Sbjct: 18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72 HSP 2 Score: 32.7278 bits (73), Expect = 2.957e-15 Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 213 GMASRDLRVKRITPRHL 263 G AS+DL+VKRITPRHL Sbjct: 71 GNASKDLKVKRITPRHL 87 The following BLAST results are available for this feature:
BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 106
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bpback to top |