CX300627

Overview
NameCX300627
Unique NameCX300627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length263
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 8.012e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGN
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRK-GNYAGRVGAGAPVYLAAVLEYLAAEVLELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 8.012e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83
[Close]
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 8.012e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGN
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVLEYLAAEVLELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 8.012e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83
[Close]
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 8.012e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGN
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVLEYLAAEVLELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 8.012e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83
[Close]
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 8.012e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGN
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVLEYLAAEVLELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 8.012e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83
[Close]
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 8.012e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGN
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVLEYLAAEVLELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 8.012e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83
[Close]
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 8.012e-11
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL+AE+LELAGN
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRK-GNYAERVGAGAPVYMAAVLEYLSAEILELAGN 68

HSP 2 Score: 23.483 bits (49), Expect = 8.012e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3 
Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   67 GNAARDNKKSRIIPRHL 83
The following BLAST results are available for this feature:
BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
H2A_MYTTR8.012e-1162.96Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A_MYTGA8.012e-1162.96Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED8.012e-1162.96Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH8.012e-1162.96Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA8.012e-1162.96Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2A_ACRFO8.012e-1161.11Histone H2A OS=Acropora formosa PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG
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