CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 9.888e-12
Identity = 30/54 (55.56%), Postives = 33/54 (61.11%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGN
Sbjct:   24 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGN 77

HSP 2 Score: 31.5722 bits (70), Expect = 9.888e-12
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A++DL+VKRITPRHL
Sbjct:   76 GNAAKDLKVKRITPRHL 92

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_EMENI (Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 9.888e-12
Identity = 30/54 (55.56%), Postives = 33/54 (61.11%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            S S++AGLQFP GRV R LK               Y  A+LEYLTAEVLELAGN
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGN 78

HSP 2 Score: 31.5722 bits (70), Expect = 9.888e-12
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A++DL+VKRITPRHL
Sbjct:   77 GNAAKDLKVKRITPRHL 93

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_COCIM (Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.283e-11
Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            S S++AGLQFP GR+ R LK               Y  A+LEYLTAEVLELAGN
Sbjct:   25 SHSAKAGLQFPCGRIKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGN 78

HSP 2 Score: 31.5722 bits (70), Expect = 1.283e-11
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A++DL+VKRITPRHL
Sbjct:   77 GNAAKDLKVKRITPRHL 93

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 63.929 bits (154), Expect = 1.669e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRIHRLLRK-GNYAERIGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 24.2534 bits (51), Expect = 1.669e-11
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G ASRD +  RI PRHL
Sbjct:   68 GNASRDNKKTRIIPRHL 84

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.803e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GHYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.803e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.803e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GHYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.803e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

[Close]

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2AZ_MONAN	9.888e-12	55.56	Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1	[more]
H2AZ_EMENI	9.888e-12	55.56	Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 ...	[more]
H2AZ_COCIM	1.283e-11	53.70	Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3...	[more]
H2A1A_HUMAN	1.669e-11	62.96	Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ...	[more]
H2AX_MOUSE	2.803e-11	64.81	Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2	[more]
H2AX_HUMAN	2.803e-11	64.81	Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2	[more]
H2A_CAIMO	2.817e-11	64.81	Histone H2A OS=Cairina moschata PE=3 SV=2	[more]
H2AJ_RAT	2.817e-11	64.81	Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S...	[more]
H2AJ_MOUSE	2.817e-11	64.81	Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1	[more]
H2AJ_MACFA	2.817e-11	64.81	Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG