CX302557

Overview
NameCX302557
Unique NameCX302557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.281e-18
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:   29 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            ++V AP   A++CGQV + LAPC+P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A
Sbjct:   15 MVVVAPHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSA 77

HSP 2 Score: 36.5798 bits (83), Expect = 1.281e-18
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 3 
Query:  234 IRGIKPNVAAGLPSQCGVRIPYKTQP 311
            I+GI    AAGLP  CGV IPYK  P
Sbjct:   81 IKGIDMGKAAGLPGACGVNIPYKISP 106

HSP 3 Score: 23.8682 bits (50), Expect = 1.281e-18
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 1 
Query:  301 RLSPSTDCSRVR 336
            ++SPSTDCS+V+
Sbjct:  103 KISPSTDCSKVQ 114
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.473e-18
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:   29 ILVTAPVTN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            ++V AP+   AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A
Sbjct:   16 MVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSA 80

HSP 2 Score: 32.3426 bits (72), Expect = 1.473e-18
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  228 GTIRGIKPNVAAGLPSQCGVRIPYK 302
            G+I  +  N AA LP +CGV IPYK
Sbjct:   82 GSITKLNTNNAAALPGKCGVDIPYK 106
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.651e-18
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:   29 ILVTAPVTNAI-TCGQVTASLAPCIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKR 220
            +L T P   A+ TCGQVT +LAPC+ +LR+    P P  CC+ VR LN AARTT D++ AC CLK+
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQ 82

HSP 2 Score: 38.5058 bits (88), Expect = 1.651e-18
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3 
Query:  234 IRGIKPNVAAGLPSQCGVRIPYKTQP 311
            + G+  N AAGLP++CGV IPYK  P
Sbjct:   87 VTGLNLNAAAGLPARCGVNIPYKISP 112

HSP 3 Score: 22.3274 bits (46), Expect = 1.651e-18
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  301 RLSPSTDCSRV 333
            ++SP+TDC+RV
Sbjct:  109 KISPTTDCNRV 119
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.491e-18
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:   29 ILVTAPVTNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRN 232
            ++V AP+  A ++CG VT  LAPCIP+L TGG  P   CC+GV+ L  AA TT DRQAACNCLK A  N
Sbjct:   16 MVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGN 83

HSP 2 Score: 32.3426 bits (72), Expect = 2.491e-18
Identity = 13/25 (52.00%), Postives = 15/25 (60.00%), Query Frame = 3 
Query:  228 GTIRGIKPNVAAGLPSQCGVRIPYK 302
            G I  + P  AA LP +C V IPYK
Sbjct:   82 GNINNLNPGNAAALPGKCNVNIPYK 106
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.219e-18
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:   29 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRN 232
            + + A V  AI+CG V  SLAPC  +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++   ++
Sbjct:   15 VCIVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKS 81

HSP 2 Score: 35.4242 bits (80), Expect = 4.219e-18
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 3 
Query:  231 TIRGIKPNVAAGLPSQCGVRIPY 299
            +I G+ P++A+GLP +CGV IPY
Sbjct:   81 SISGLNPSLASGLPGKCGVSIPY 103
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.279e-18
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:   32 LVTAPVTN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            ++ AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A
Sbjct:   16 MIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSA 79

HSP 2 Score: 30.8018 bits (68), Expect = 9.279e-18
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 3 
Query:  231 TIRGIKPNVAAGLPSQCGVRIPYK 302
            +I  +  N AA LP +CGV IPYK
Sbjct:   82 SITKLNTNNAAALPGKCGVNIPYK 105
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.014e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 2 
Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALR 229
            ++V A  T+  AI+CGQV++++A C+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A R
Sbjct:   15 VVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAAR 83

HSP 2 Score: 29.261 bits (64), Expect = 1.014e-17
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 3 
Query:  234 IRGIKPNVAAGLPSQCGVRIPY 299
            I G+    AA +PS+CGV +PY
Sbjct:   85 ISGLNAGNAASIPSKCGVSVPY 106

HSP 3 Score: 20.7866 bits (42), Expect = 1.014e-17
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:  304 LSPSTDCSRV 333
            +S STDCSRV
Sbjct:  108 ISTSTDCSRV 117
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.037e-17
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK 217
            +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK
Sbjct:   16 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLK 79

HSP 2 Score: 34.2686 bits (77), Expect = 2.037e-17
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 3 
Query:  228 GTIRGIKPNVAAGLPSQCGVRIPYKTQP 311
            G+I G+    AA +PS+CGV IPY   P
Sbjct:   83 GSISGLNAGNAASIPSKCGVSIPYTISP 110
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.037e-17
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK 217
            +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK
Sbjct:   15 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLK 78

HSP 2 Score: 34.2686 bits (77), Expect = 2.037e-17
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 3 
Query:  228 GTIRGIKPNVAAGLPSQCGVRIPYKTQP 311
            G+I G+    AA +PS+CGV IPY   P
Sbjct:   82 GSISGLNAGNAASIPSKCGVSIPYTISP 109
[Close]
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.037e-17
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK 217
            +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK
Sbjct:   16 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLK 79

HSP 2 Score: 34.2686 bits (77), Expect = 2.037e-17
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 3 
Query:  228 GTIRGIKPNVAAGLPSQCGVRIPYKTQP 311
            G+I G+    AA +PS+CGV IPY   P
Sbjct:   83 GSISGLNAGNAASIPSKCGVSIPYTISP 110
The following BLAST results are available for this feature:
BLAST of CX302557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP2_TOBAC1.281e-1850.77Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP6_LENCU1.473e-1859.09Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP_DAUCA1.651e-1853.03Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP3_LENCU2.491e-1857.97Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP3_ARATH4.219e-1848.53Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP5_LENCU9.279e-1856.92Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_SORBI1.014e-1756.52Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI2.037e-1755.38Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ2.037e-1755.38Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ2.037e-1755.38Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC07012H03SK SaltLeaf1 Citrus clementina cDNA clone C07012H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302557 ID=CX302557; Name=CX302557; organism=Citrus clementina; type=EST; length=580bp
CGGGANNNNNNNNNNNNNNNNNNNNNGCATTCTGGTGACTGCCCCGGTGA
CTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCATGCATC
CCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGTAGCGG
CGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCAAGCTG
CATGCAACTGCTTGAAACGAGCTTTACGGAACAATCCGCGGCATCAAACC
TAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCCTTACA
AGACTCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGTTTG
AGCTCTGTGACTTTTCCAAGTATGATTGACTTGAGAAGAATAAATAAATA
AAGAACATCTATGTTTAATTTCTTTTGTCCGAACGAGTCTCCACTTTGTA
TGAGTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTTATGTCATAT
TAAATATGTAAACGCGATCTTGTGTTTTGAGTGATTAATTATAGTTATTT
TGTGGTATTATCTTAAAAAAAAAAAAAAAA
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