CX302557

Overview
NameCX302557
Unique NameCX302557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.653e-17
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   29 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            ++V AP   A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQAAC CLK A
Sbjct:   15 MVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSA 77          

HSP 2 Score: 31.187 bits (69), Expect = 2.653e-17
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 1
Query:  196 SCMQLLETSFTEQSAASNLMLPLAFLVNVESEFLTRLSPSTDCSRVR 336
            +C++   +SFT+        LP    VN+      ++SPSTDCS+V+
Sbjct:   72 ACLKSAASSFTDLDLGKAASLPSTCNVNIPY----KISPSTDCSKVQ 114          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.478e-17
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALR 229
            ++V  P+T+  A++CG V ++LA CI ++  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++ A R
Sbjct:   15 MIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAAR 82          

HSP 2 Score: 30.8018 bits (68), Expect = 4.478e-17
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 3
Query:  240 GIKPNVAAGLPSQCGVRIPYK 302
            G+    AAG+P  CGV IPYK
Sbjct:   87 GLNAGRAAGIPKACGVNIPYK 107          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.989e-17
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   59 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            +TCGQV  +LA CI FL+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAA 54          

HSP 2 Score: 39.6614 bits (91), Expect = 5.989e-17
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:  228 GTIRGIKPNVAAGLPSQCGVRIPYK 302
            G +RGI PN A  LP +CGV IPYK
Sbjct:   56 GAVRGINPNNAEALPGKCGVNIPYK 80          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.596e-17
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   53 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK 217
            +AITCGQV + L  C+ + R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLK 74          

HSP 2 Score: 30.4166 bits (67), Expect = 7.596e-17
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  240 GIKPNVAAGLPSQCGVRIPYKTQPQ 314
            G+   + AG+P +CGV IPY  + Q
Sbjct:   82 GLNAAIVAGIPGKCGVNIPYPIRMQ 106          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.842e-17
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 2
Query:   29 ILVTAPVTNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            I+V AP   A ITCG V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A
Sbjct:   17 IVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSA 80          

HSP 2 Score: 34.6538 bits (78), Expect = 9.842e-17
Identity = 15/26 (57.69%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  234 IRGIKPNVAAGLPSQCGVRIPYKTQP 311
            I+GI    AAGLP  CGV IPY   P
Sbjct:   84 IKGINYGKAAGLPGMCGVHIPYAISP 109          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.858e-17
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   29 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            ++V AP   A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQ AC CLK A
Sbjct:   15 MVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSA 77          

HSP 2 Score: 30.0314 bits (66), Expect = 9.858e-17
Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 1
Query:  196 SCMQLLETSFTEQSAASNLMLPLAFLVNVESEFLTRLSPSTDCSRVR 336
            +C++   +SFT         LP    VN+      ++SPSTDCS+V+
Sbjct:   72 TCLKSAASSFTGLDLGKAASLPSTCSVNIPY----KISPSTDCSKVQ 114          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.282e-16
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 2
Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA 81          

HSP 2 Score: 30.4166 bits (67), Expect = 1.282e-16
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  240 GIKPNVAAGLPSQCGVRIPY 299
            G+    AAG+PS CGV +PY
Sbjct:   84 GLNAGKAAGIPSMCGVSVPY 103          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.342e-16
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 2
Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRNNP 238
            A++CGQV  +L PCI ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A+   P
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIP 89          

HSP 2 Score: 33.4982 bits (75), Expect = 1.342e-16
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  255 VAAGLPSQCGVRIPYKTQP 311
            +AAGLP +CGV IPYK  P
Sbjct:   97 LAAGLPGKCGVNIPYKISP 115          

HSP 3 Score: 21.1718 bits (43), Expect = 1.342e-16
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  301 RLSPSTDCSRVR 336
            ++SPSTDC  ++
Sbjct:  112 KISPSTDCKSIK 123          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.659e-16
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRN 232
            ++   P+T   A++CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A RN
Sbjct:   15 VIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARN 85          

HSP 2 Score: 33.8834 bits (76), Expect = 1.659e-16
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  240 GIKPNVAAGLPSQCGVRIPYKTQ 308
            G+  + AAG+P +CG++IPY TQ
Sbjct:   89 GLNADRAAGIPRRCGIKIPYSTQ 111          
BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.666e-16
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 2
Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA 81          

HSP 2 Score: 30.4166 bits (67), Expect = 1.666e-16
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  240 GIKPNVAAGLPSQCGVRIPY 299
            G+    AAG+PS CGV +PY
Sbjct:   84 GLNAGKAAGIPSMCGVSVPY 103          
The following BLAST results are available for this feature:
BLAST of CX302557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP2_SOLCI2.653e-1756.92Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_ARATH4.478e-1750.72Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP1_PHAAU5.989e-1754.55Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
SCA_LILLO7.596e-1761.82Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP_SPIOL9.842e-1754.55Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP2_SOLPN9.858e-1755.38Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLT41_HORVU1.282e-1657.14Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP3_PRUDU1.342e-1652.46Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP7_ARATH1.659e-1646.48Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLT43_HORVU1.666e-1657.14Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionC07012H03SK SaltLeaf1 Citrus clementina cDNA clone C07012H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302557 ID=CX302557; Name=CX302557; organism=Citrus clementina; type=EST; length=580bp
CGGGANNNNNNNNNNNNNNNNNNNNNGCATTCTGGTGACTGCCCCGGTGA
CTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCATGCATC
CCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGTAGCGG
CGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCAAGCTG
CATGCAACTGCTTGAAACGAGCTTTACGGAACAATCCGCGGCATCAAACC
TAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCCTTACA
AGACTCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGTTTG
AGCTCTGTGACTTTTCCAAGTATGATTGACTTGAGAAGAATAAATAAATA
AAGAACATCTATGTTTAATTTCTTTTGTCCGAACGAGTCTCCACTTTGTA
TGAGTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTTATGTCATAT
TAAATATGTAAACGCGATCTTGTGTTTTGAGTGATTAATTATAGTTATTT
TGTGGTATTATCTTAAAAAAAAAAAAAAAA
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