CX302557 | Citrus Genome Database

Overview


Name	CX302557
Unique Name	CX302557
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	580

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.503e-14
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 2

Query:   59 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRN 232
            ++CG V   LAPCI +LR+ G  P   CC+GV++L  +A TT DR+ AC CL  A ++
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKS 57

HSP 2 Score: 36.965 bits (84), Expect = 2.503e-14
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 3

Query:  231 TIRGIKPNVAAGLPSQCGVRIPYKTQP 311
            +I G+   +AAGLP +CGV IPYK  P
Sbjct:   57 SISGVNFGLAAGLPGKCGVNIPYKISP 83

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.096e-14
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 2

Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRNNP 238
            ++V  P+    A++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A    P
Sbjct:   15 MIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALP 85

HSP 2 Score: 30.0314 bits (66), Expect = 4.096e-14
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 3

Query:  258 AAGLPSQCGVRIPYK 302
            AAGLP  CGV IPYK
Sbjct:   92 AAGLPKACGVNIPYK 106

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.332e-14
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 2

Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK 217
            AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK 79

HSP 2 Score: 28.8758 bits (63), Expect = 5.332e-14
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  258 AAGLPSQCGVRIPY 299
            AAG+PS+CGV +PY
Sbjct:   90 AAGIPSRCGVSVPY 103

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.454e-14
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 2

Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRA 223
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSA 57

HSP 2 Score: 28.1054 bits (61), Expect = 5.454e-14
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 3

Query:  237 RGIKPNVAAGLPSQCGVRIPYKTQP 311
            + +   VAA L SQCGVR+ Y   P
Sbjct:   62 KSLNYKVAARLASQCGVRMSYSVSP 86

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.454e-14
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 2

Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRA 223
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSA 57

HSP 2 Score: 28.1054 bits (61), Expect = 5.454e-14
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 3

Query:  237 RGIKPNVAAGLPSQCGVRIPYKTQP 311
            + +   VAA L SQCGVR+ Y   P
Sbjct:   62 KSLNYKVAARLASQCGVRMSYSVSP 86

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 9.003e-14
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 2

Query:   56 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTA 80

HSP 2 Score: 23.8682 bits (50), Expect = 9.003e-14
Identity = 7/23 (30.43%), Postives = 14/23 (60.87%), Query Frame = 3

Query:  243 IKPNVAAGLPSQCGVRIPYKTQP 311
            ++P++A+ LP +CG+       P
Sbjct:   86 VRPDMASSLPGKCGISTSIPINP 108

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.168e-13
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2

Query:   29 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALRNNP 238
            ++V  P+    A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  + P
Sbjct:   15 MIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFP 85

HSP 2 Score: 30.0314 bits (66), Expect = 1.168e-13
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 3

Query:  258 AAGLPSQCGVRIPYK 302
            AAGLP  CGV IPYK
Sbjct:   92 AAGLPKACGVNIPYK 106

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.520e-13
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2

Query:   29 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 223
            ++V AP   +++CG+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A
Sbjct:   15 MVVVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSA 77

HSP 2 Score: 22.7126 bits (47), Expect = 1.520e-13
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1

Query:  301 RLSPSTDCSRVR 336
            ++SPSTDCS V+
Sbjct:  103 KISPSTDCSTVQ 114

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 2

Query:   29 ILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALR 229
            +L+ AP    AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A R
Sbjct:   15 LLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAAR 81

[Close]

BLAST of CX302557 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 2

Query:   29 ILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRALR 229
            +L+ AP    AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A R
Sbjct:   15 LLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAAR 81

The following BLAST results are available for this feature:

BLAST of CX302557 vs. ExPASy Swiss-Prot

BLAST of CX302557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
NLTP5_VITSX	2.503e-14	46.55	Non-specific lipid-transfer protein P5 OS=Vitis sp...	[more]
NLTP3_BRANA	4.096e-14	48.61	Non-specific lipid-transfer protein 3 OS=Brassica ...	[more]
NLTP8_HORVU	5.332e-14	53.70	Non-specific lipid-transfer protein Cw18 OS=Hordeu...	[more]
NLTP_AMACA	5.454e-14	54.39	Non-specific lipid-transfer protein OS=Amaranthus ...	[more]
NLTP1_AMAHP	5.454e-14	54.39	Non-specific lipid-transfer protein 1 OS=Amaranthu...	[more]
NLTP1_HELAN	9.003e-14	55.36	Non-specific lipid-transfer protein AP10 OS=Helian...	[more]
NLTPB_BRAOT	1.168e-13	45.83	Non-specific lipid-transfer protein B OS=Brassica ...	[more]
NLTP2_SOLLC	1.520e-13	50.77	Non-specific lipid-transfer protein 2 OS=Solanum l...	[more]
NLTP1_ORYSJ	1.636e-13	55.88	Non-specific lipid-transfer protein 1 OS=Oryza sat...	[more]
NLTP1_ORYSI	1.636e-13	55.88	Non-specific lipid-transfer protein 1 OS=Oryza sat...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012H03SK SaltLeaf1 Citrus clementina cDNA clone C07012H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX302557 ID=CX302557; Name=CX302557; organism=Citrus clementina; type=EST; length=580bp
CGGGANNNNNNNNNNNNNNNNNNNNNGCATTCTGGTGACTGCCCCGGTGA
CTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCATGCATC
CCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGTAGCGG
CGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCAAGCTG
CATGCAACTGCTTGAAACGAGCTTTACGGAACAATCCGCGGCATCAAACC
TAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCCTTACA
AGACTCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGTTTG
AGCTCTGTGACTTTTCCAAGTATGATTGACTTGAGAAGAATAAATAAATA
AAGAACATCTATGTTTAATTTCTTTTGTCCGAACGAGTCTCCACTTTGTA
TGAGTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTTATGTCATAT
TAAATATGTAAACGCGATCTTGTGTTTTGAGTGATTAATTATAGTTATTT
TGTGGTATTATCTTAAAAAAAAAAAAAAAA