CX305207

Overview
NameCX305207
Unique NameCX305207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   95 VYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.161e-27
Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = -2
Query:  269 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 559
            VYAHFPIN  I      +EIRNFLGEK +R+V M  GV    S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T++  E
Sbjct:   95 VYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.128e-27
Identity = 63/93 (67.74%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   95 VYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.328e-25
Identity = 51/93 (54.84%), Postives = 73/93 (78.49%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN ++ +  + +EIRNF GEK VR++++LDG+T  R++K KDE+VL GN +EL+S+S A I  +  +K KD+RKFLDGIYVSE++ +
Sbjct:   93 VYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.734e-25
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = -2
Query:  278 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 559
            VYAHFPIN ++ + N+ +EIRNFLGEK VR+V + +GV    S   KDE+V++GND++ VS++AA I Q   VK KDIRKFLDGIYVSEK+TI+
Sbjct:   93 VYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.734e-25
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   93 VYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.958e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   93 VYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.468e-24
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  278 VYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 559
            VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I+
Sbjct:   93 VYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.918e-24
Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  281 VYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I
Sbjct:   93 VYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  290 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 559
            VY+HFP+   +  +   IE  NFLGEK  R   ++ GVTV    KV KD+++++G DIE V ++AA I Q   VK+KD R F+DGIY+ EK
Sbjct:   98 VYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182          
The following BLAST results are available for this feature:
BLAST of CX305207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL9_BOVIN1.853e-2767.7460S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_ICTPU3.161e-2765.9860S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_PONAB4.128e-2767.7460S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_DICDI1.328e-2554.8460S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL1.734e-2559.5760S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9A_SCHPO1.734e-2561.2960S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL9B_SCHPO2.958e-2560.2260S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9B_YEAST1.468e-2460.4260S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST1.918e-2461.0560S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL6_HYPBU3.393e-1347.2550S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionC18002E06Rv Drought1 Citrus clementina cDNA clone C18002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305207 ID=CX305207; Name=CX305207; organism=Citrus clementina; type=EST; length=560bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAGATTATTCAAGAGGTAGAT
AAAAGATCAAAAATGCCAGATGCATAGCTATAAAATCCATACATATATTG
TGATGATAGCAATTGAAGACATAAAATTGAAATCTAGAACTCCCAAGTCC
CAAATCCCAAATACAACCAAAAGCATGTCCTCAACTCAAAGTAAGAGGCA
AAATTAAAAAGATTTAAAAAAAAATTCATAACATTACTATGACGAGAAAA
TTCGAAAGCTAATCATCATTCTTCTCCAAGTATGGTGCTTTTCTCACTGA
CATAGATCCCATCAAGAAATTTCCTAATGTCCTTGTTCTTCACATGGCAT
TTCTGATTGATTAGAGCAGCAGAGCGAGACACGAGTTCAATGTCATTTCC
ATCAAGAACGAGTTCATCCTTAACCTTATCGGACCTAATGACGGTAACAC
CATCAAGCATATCCACTTTTCGAACCTTTTTCTCTCCAAGAAAGTTACGG
ATCTCAATGGCCTTGTTATTGTTACCGATGGAGGCGTTGATGGGAAAGTG
AGCGTACACA
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