CX305207

Overview
NameCX305207
Unique NameCX305207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 5.933e-42
Identity = 84/93 (90.32%), Postives = 90/93 (96.77%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPINASI N+N AIEIRNFLGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+K TI
Sbjct:   94 VYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.012e-41
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = -2
Query:  269 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 559
            VYAHFPINASIG + K+IEIRNFLGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKS I+ EE
Sbjct:   98 VYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.256e-40
Identity = 81/97 (83.51%), Postives = 90/97 (92.78%), Query Frame = -2
Query:  269 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 559
            VYA FPINASI N+NK+IEIRNFLGEKKVRKVD+LDGV++IRS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  ++ EE
Sbjct:   97 VYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.252e-40
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = -2
Query:  269 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 559
            VYAHFPINASI  NNK+IEIRNFLGEKKVRKV+MLDGV ++RS+KVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  I  EE
Sbjct:   98 VYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.586e-29
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = -2
Query:  278 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 559
            VYAHFPIN     NN  IEIRNFLGEK +R+V+M  GVTV+ S   KDEL+++GNDIE VS SAALI Q   VKNKDIRKFLDG+YVSEK+T++
Sbjct:   93 VYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.369e-28
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = -2
Query:  269 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 559
            VYAHFPIN      N  IEIRNFLGEK +R+V M  GVTV+ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVSEK+T+  +E
Sbjct:   93 VYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVEVDE 189          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   95 VYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   95 VYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   95 VYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   95 VYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
The following BLAST results are available for this feature:
BLAST of CX305207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL9_ORYSJ5.933e-4290.3260S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL91_ARATH1.012e-4185.5760S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_PEA3.256e-4083.5160S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL92_ARATH4.252e-4082.4760S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_DROME2.586e-2967.0260S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_SPOFR6.369e-2863.9260S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_RAT1.853e-2767.7460S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_MOUSE1.853e-2767.7460S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA1.853e-2767.7460S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_HUMAN1.853e-2767.7460S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionC18002E06Rv Drought1 Citrus clementina cDNA clone C18002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305207 ID=CX305207; Name=CX305207; organism=Citrus clementina; type=EST; length=560bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAGATTATTCAAGAGGTAGAT
AAAAGATCAAAAATGCCAGATGCATAGCTATAAAATCCATACATATATTG
TGATGATAGCAATTGAAGACATAAAATTGAAATCTAGAACTCCCAAGTCC
CAAATCCCAAATACAACCAAAAGCATGTCCTCAACTCAAAGTAAGAGGCA
AAATTAAAAAGATTTAAAAAAAAATTCATAACATTACTATGACGAGAAAA
TTCGAAAGCTAATCATCATTCTTCTCCAAGTATGGTGCTTTTCTCACTGA
CATAGATCCCATCAAGAAATTTCCTAATGTCCTTGTTCTTCACATGGCAT
TTCTGATTGATTAGAGCAGCAGAGCGAGACACGAGTTCAATGTCATTTCC
ATCAAGAACGAGTTCATCCTTAACCTTATCGGACCTAATGACGGTAACAC
CATCAAGCATATCCACTTTTCGAACCTTTTTCTCTCCAAGAAAGTTACGG
ATCTCAATGGCCTTGTTATTGTTACCGATGGAGGCGTTGATGGGAAAGTG
AGCGTACACA
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