CX305207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12 Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = -2 Query: 278 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 559 +++HFPI S+ NK + IRNF+GEK R + V V S ++++++G DIE V +AA I + V ++D R F+DGIY+ EK L Sbjct: 94 IFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11 Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2 Query: 287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556 YAHFP+ S N I+ NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 94 YAHFPMKVSAKGNTVTID--NFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11 Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2 Query: 287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556 YAHFP+ S N I+ NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 94 YAHFPMKVSAKGNTVTID--NFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11 Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = -2 Query: 287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556 YAHFP+ S+ N IE NFLGEK R+ +++GVTV S +++++ G D E V ++AA I Q +K +D R F DGIY+ EK+ Sbjct: 94 YAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11 Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2 Query: 287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556 YAHFP+ S N I+ NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 94 YAHFPMKVSAKGNTVMID--NFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11 Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2 Query: 287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556 YAHFP+ S N I+ NFLGEK R ++DGVTV S +++V+ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 94 YAHFPMKVSAKGNTVMID--NFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11 Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = -2 Query: 281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559 +Y+HFPIN + +K I I NFLGEK +R ++ GV V +VK +++++G D+E V+++AA I VK+KD RKF+DGIY+ E+ I Sbjct: 94 MYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11 Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = -2 Query: 287 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 559 VY+HFPI+ + + IE NFLGEK RK +L GVTV KV+ E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 93 VYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11 Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = -2 Query: 287 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 559 VY+HFPI + + IE NFLGEK R+ +L GVTV KVK E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 93 VYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178 The following BLAST results are available for this feature:
BLAST of CX305207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX305207 ID=CX305207; Name=CX305207; organism=Citrus clementina; type=EST; length=560bpback to top |