CX305207

Overview
NameCX305207
Unique NameCX305207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = -2
Query:  278 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 559
            +++HFPI  S+   NK + IRNF+GEK  R   +   V V  S    ++++++G DIE V  +AA I +   V ++D R F+DGIY+ EK   L
Sbjct:   94 IFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556
            YAHFP+  S   N   I+  NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   94 YAHFPMKVSAKGNTVTID--NFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556
            YAHFP+  S   N   I+  NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   94 YAHFPMKVSAKGNTVTID--NFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556
            YAHFP+  S+  N   IE  NFLGEK  R+  +++GVTV  S    +++++ G D E V ++AA I Q   +K +D R F DGIY+ EK+
Sbjct:   94 YAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556
            YAHFP+  S   N   I+  NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   94 YAHFPMKVSAKGNTVMID--NFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  287 YAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 556
            YAHFP+  S   N   I+  NFLGEK  R   ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   94 YAHFPMKVSAKGNTVMID--NFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = -2
Query:  281 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 559
            +Y+HFPIN  +   +K I I NFLGEK +R   ++ GV V    +VK  +++++G D+E V+++AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:   94 MYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  287 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 559
            VY+HFPI+  +  +   IE  NFLGEK  RK  +L GVTV    KV+  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   93 VYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178          
BLAST of CX305207 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  287 VYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 559
            VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   93 VYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of CX305207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL6_DESK12.872e-1239.3650S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_METM71.425e-1144.4450S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM51.425e-1144.4450S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METJA1.425e-1143.3350S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_METM61.862e-1144.4450S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METMP3.175e-1144.4450S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_AERPE3.175e-1143.6250S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_PYRFU7.074e-1144.5750S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_PYRAB7.074e-1144.5750S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18002E06Rv Drought1 Citrus clementina cDNA clone C18002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305207 ID=CX305207; Name=CX305207; organism=Citrus clementina; type=EST; length=560bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAGATTATTCAAGAGGTAGAT
AAAAGATCAAAAATGCCAGATGCATAGCTATAAAATCCATACATATATTG
TGATGATAGCAATTGAAGACATAAAATTGAAATCTAGAACTCCCAAGTCC
CAAATCCCAAATACAACCAAAAGCATGTCCTCAACTCAAAGTAAGAGGCA
AAATTAAAAAGATTTAAAAAAAAATTCATAACATTACTATGACGAGAAAA
TTCGAAAGCTAATCATCATTCTTCTCCAAGTATGGTGCTTTTCTCACTGA
CATAGATCCCATCAAGAAATTTCCTAATGTCCTTGTTCTTCACATGGCAT
TTCTGATTGATTAGAGCAGCAGAGCGAGACACGAGTTCAATGTCATTTCC
ATCAAGAACGAGTTCATCCTTAACCTTATCGGACCTAATGACGGTAACAC
CATCAAGCATATCCACTTTTCGAACCTTTTTCTCTCCAAGAAAGTTACGG
ATCTCAATGGCCTTGTTATTGTTACCGATGGAGGCGTTGATGGGAAAGTG
AGCGTACACA
back to top