CX306342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.451e-26 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = -3 Query: 184 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAGGD 354 LAVLQFYKVD +GKVQ LRKECPNAECGAGTFM NHFDRHYCGKCGLTYVY KAGGD Sbjct: 24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.451e-26 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = -3 Query: 184 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAGGD 354 LAVLQFYKVD +GKVQ LRKECPNAECGAGTFM NHFDRHYCGKCGLTYVY KAGGD Sbjct: 24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.110e-24 Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = -3 Query: 190 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAG 354 LAVLQFYKVDGSGKVQ LRKECPNA CGAGTFM +HFDRHYCGKCGLTYVYQK G Sbjct: 24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.450e-24 Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = -3 Query: 190 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKAG 354 LAVLQFYK+DGSGKVQ LRKECPNA CGAGTFM +HFDRHYCGKCGLTYVYQK G Sbjct: 24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 7.197e-24 Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = -3 Query: 193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354 LAVLQFYKVD SGKVQ LRKECPN ECGAGTFM NHFDRHYCGKCG TYVYQKA Sbjct: 24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = -3 Query: 196 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQK 354 LAVLQFYKVD +GKV LRKECPNAECGAGTFM NH DRHYCGKCGLTYVYQK Sbjct: 24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.343e-21 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = -3 Query: 193 LAVLQFYKVDGSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKA 354 LAVLQFYKVDGSGKVQ L+KECP+ CG GTFM +HFDRHYCGKCG TYV++KA Sbjct: 24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.702e-21 Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -3 Query: 193 LAVLQFYKVD-GSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVY-QKA 354 LAVLQFYKVD +GKV LRKECPNA+CGAGTFM NHFDRHYCGKCGLTYVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = -3 Query: 193 LAVLQFYKVD-GSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVY-QKA 354 LAVLQFYKVD +GKV LRKECPN +CGAGTFM NHFDRHYCGKCGLTYVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CX306342 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20 Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = -3 Query: 193 LAVLQFYKVD-GSGKVQGLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVY-QKA 354 LAVLQFYKVD +GKV LRKECPN ECGAG FM NHFDRHYCGKCGLTYVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79 The following BLAST results are available for this feature:
BLAST of CX306342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306342 ID=CX306342; Name=CX306342; organism=Citrus clementina; type=EST; length=497bpback to top |