CX306417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.642e-18 Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 55 VPILSFL----LMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 VP+ S L LM++ + F+GGL+W T D+SL +AF+ +GD++++K+ DRETGRSRGFGFV F DE + AI ++G+ L+GR+I VN A Sbjct: 21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.026e-17 Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 85 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 S D R +VG L+W D +L E FS G+++++K+ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17 Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 85 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 S D R +VG L+W D +L E FS G+++++K+ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 100 FRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 +R +VG + W D+ L + FS +G ++ +++ DRETGRSRGFGFVT E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 100 FRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 FR +VG L W + L + FS +G ++E+++ DRETGRSRGFGFVT D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.917e-16 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1 Query: 97 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 E + FVGGL + TT+ SL + FS YG + E + DRE+ RSRGFGFVTF + + +DA+ +NG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.295e-15 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 R +VG L W S L + FS +G ++ +++ +DRETGRSRGFGFVT E + DAI ++GQ LDGR + VN A+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.692e-15 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 100 FRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 +R +VG + W D+ L + FS +G ++ +++ DRE+GRSRGFGFVT E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.692e-15 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 88 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 A E + FVGGL++ T + SL + FS YG I E + DRET RSRGFGFVTF + +DA+ +NG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.692e-15 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 88 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 A E + FVGGL++ T + SL + FS YG I E + DRET RSRGFGFVTF + +DA+ +NG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of CX306417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306417 ID=CX306417; Name=CX306417; organism=Citrus clementina; type=EST; length=505bpback to top |