CX306417

Overview
NameCX306417
Unique NameCX306417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.212e-13
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   85 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            S D   R +VG LAW     +L   FS  G ++++K+  DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.212e-13
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   85 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            S D   R +VG LAW     +L   FS  G ++++K+  DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   55 VPILSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333
            VP+ S +L +   +  + ++GGL+  T + SL +AFS++  + E+++  ++ TGRSRG+GFV F  E S   AI  +NGQ L+G NI+VN A+
Sbjct:   17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   97 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            E + FVGGL + T + +L + FS++G I E  +  DRET RSRGFGF+TF + +    A+  +NG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + +L   F  YG I+E  +  DRET +SRGF FVTF      +DA   +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + +L   F  YG I+E  +  DRET +SRGF FVTF      +DA   +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + +L   F  YG I+E  +  DRET +SRGF FVTF      +D    +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.900e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + +L   F  YG I+E  +  DRET +SRGF FVT       +DA   +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + SL   F  YG I E  +  DRET +SRGF F+TF      + A+  +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTDSSL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CX306417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ROC1_NICSY1.212e-1342.1729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL1.212e-1342.1730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RT19_ARATH2.068e-1340.8640S ribosomal protein S19, mitochondrial OS=Arabid... [more]
RBM3_HUMAN3.527e-1346.15Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_PANTR6.016e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN6.016e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
HNRPG_RAT1.750e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE3.900e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN5.093e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
RBM38_CHICK1.135e-1147.37RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]

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Properties
Property NameValue
Genbank descriptionC18017G12Rv Drought1 Citrus clementina cDNA clone C18017G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306417 ID=CX306417; Name=CX306417; organism=Citrus clementina; type=EST; length=505bp
GCGGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTT
CTTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGT
TTCGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTC
CATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTACTAA
CGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCG
ATGAGAAGTCGATGAGGGACGCAATCGAAGGCGTGAACGGCCAGAATCTG
GACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGG
CGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTG
GTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGA
TACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAG
CCGTG
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