CX306417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.212e-13 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 85 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 S D R +VG LAW +L FS G ++++K+ DR++GRSRGFGFVT+ + + +AIE ++G +L+GR I V+ A+ Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.212e-13 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 85 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 S D R +VG LAW +L FS G ++++K+ DR++GRSRGFGFVT+ + + +AIE ++G +L+GR I V+ A+ Sbjct: 189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13 Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 55 VPILSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEAQ 333 VP+ S +L + + + ++GGL+ T + SL +AFS++ + E+++ ++ TGRSRG+GFV F E S AI +NGQ L+G NI+VN A+ Sbjct: 17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 97 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 E + FVGGL + T + +L + FS++G I E + DRET RSRGFGF+TF + + A+ +NG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 M AD + F+GGL T + +L F YG I+E + DRET +SRGF FVTF +DA +NG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 M AD + F+GGL T + +L F YG I+E + DRET +SRGF FVTF +DA +NG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 M AD + F+GGL T + +L F YG I+E + DRET +SRGF FVTF +D +NG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.900e-12 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 M AD + F+GGL T + +L F YG I+E + DRET +SRGF FVT +DA +NG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 M AD + F+GGL T + SL F YG I E + DRET +SRGF F+TF + A+ +NG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11 Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330 + FVGGL + TTDSSL + F +GDI E+ + DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86 The following BLAST results are available for this feature:
BLAST of CX306417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306417 ID=CX306417; Name=CX306417; organism=Citrus clementina; type=EST; length=505bpback to top |