CX306417

Overview
NameCX306417
Unique NameCX306417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTDSSL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTDSSL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTDSSL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTDSSL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + +L   F  YG I+E  +  DRET +SRGF FVTF    + + A   +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   79 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            M  AD   + F+GGL   T + +L   F  YG I+E  +  DRET +SRGF FVTF      + A   +NG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTD+SL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + F+GGL W TTD SL + F  +G++L+  +  D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTD+SL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX306417 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  103 RCFVGGLAWATTDSSLHEAFSAYGDILESKITNDRETGRSRGFGFVTFRDEKSMRDAIEGVNGQNLDGRNITVNEA 330
            + FVGGL + TTD+SL + F  +GDI E+ +  DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
The following BLAST results are available for this feature:
BLAST of CX306417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RBM24_XENTR1.135e-1147.37RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK1.135e-1147.37RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA1.135e-1147.37RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA1.135e-1147.37RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRGT_MACFA1.135e-1141.67RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]
HNRGT_HUMAN1.482e-1141.67RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
RBM38_HUMAN2.528e-1146.05RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
YHKF_SCHPO3.301e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM38_XENTR3.301e-1146.05RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
RBM38_MOUSE4.312e-1146.05RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]

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Properties
Property NameValue
Genbank descriptionC18017G12Rv Drought1 Citrus clementina cDNA clone C18017G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306417 ID=CX306417; Name=CX306417; organism=Citrus clementina; type=EST; length=505bp
GCGGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTT
CTTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGT
TTCGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTC
CATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTACTAA
CGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCG
ATGAGAAGTCGATGAGGGACGCAATCGAAGGCGTGAACGGCCAGAATCTG
GACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGG
CGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTG
GTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGA
TACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAG
CCGTG
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