CX308697

Overview
NameCX308697
Unique NameCX308697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15354 contig Ccv1_Contig15354:214..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44P_CANMA (60S ribosomal protein L44 P OS=Candida maltosa GN=L41P1A PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_AEDTR (60S ribosomal protein L44 OS=Aedes triseriatus GN=RpL44 PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLR++C  CK+  Q P+KRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKG 99          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGD+K KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_CHLRE (60S ribosomal protein L44 OS=Chlamydomonas reinhardtii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  226 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 366
            GQT+PVFHKKAKTTKKIVLR+QCQ CK      +KRCKHFEIGGDKK
Sbjct:   50 GQTKPVFHKKAKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIGGDKK 96          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_BRUMA (60S ribosomal protein L44 OS=Brugia malayi GN=rpl-44 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:   51 GQTKPIFRKKAKTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKKTRG 100          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_YEAST (60S ribosomal protein L42 OS=Saccharomyces cerevisiae GN=RPL42A PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.879e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG +L
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_SCHPO (60S ribosomal protein L44 OS=Schizosaccharomyces pombe GN=rpl44 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.879e-16
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAK TKK+VLRL+C  CK+ +Q  +KRCKHFE+GG+KK KG ++
Sbjct:   52 GQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAI 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.678e-16
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct:   52 GQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_KLUMA (60S ribosomal protein L44 OS=Kluyveromyces marxianus GN=RPL44 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG +L
Sbjct:   52 GQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_KLULA (60S ribosomal protein L44 OS=Kluyveromyces lactis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG +L
Sbjct:   52 GQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKGQAL 104          
The following BLAST results are available for this feature:
BLAST of CX308697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL44P_CANMA2.021e-1671.7060S ribosomal protein L44 P OS=Candida maltosa GN=... [more]
RL44_AEDTR2.639e-1672.0060S ribosomal protein L44 OS=Aedes triseriatus GN=... [more]
RL44_PICCI4.501e-1669.8160S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_CHLRE4.501e-1678.7260S ribosomal protein L44 OS=Chlamydomonas reinhar... [more]
RL44_BRUMA4.501e-1672.0060S ribosomal protein L44 OS=Brugia malayi GN=rpl-... [more]
RL44_YEAST5.879e-1669.8160S ribosomal protein L42 OS=Saccharomyces cerevis... [more]
RL44_SCHPO5.879e-1666.0460S ribosomal protein L44 OS=Schizosaccharomyces p... [more]
RL44_CRYNE7.678e-1667.9260S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_KLUMA1.711e-1566.0460S ribosomal protein L44 OS=Kluyveromyces marxian... [more]
RL44_KLULA1.711e-1566.0460S ribosomal protein L44 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionC21002G11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308697 ID=CX308697; Name=CX308697; organism=Citrus clementina; type=EST; length=368bp
TTTTTTTTTTTTTTTTTTTTTTGGTCAAAAAATCCAAATCTAAAATTAAC
TGATATAATAAGCACTTAACAAACAACAGCTTCAAGTTTTAAATTAACAG
CACCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAAA
GTTCCATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATTAAGGCA
TTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAG
TGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCA
TTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAGA
CAGGCTCGGTCTGACCAC
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