CX308697

Overview
NameCX308697
Unique NameCX308697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15354 contig Ccv1_Contig15354:214..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_ASHGO (60S ribosomal protein L44 OS=Ashbya gossypii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ +F KKAKTTKK+VLRL+C  CK  +Q P+KRCKHFE+GG+KK KG +L
Sbjct:   52 GQTKQIFRKKAKTTKKVVLRLECLSCKTKAQLPLKRCKHFELGGEKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_YARLI (60S ribosomal protein L44 OS=Yarrowia lipolytica GN=RPL44 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ +FHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKQIFHKKAKTTKKVVLRLECVKCKVKMQLALKRCKHFELGGDKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_DEBOC (60S ribosomal protein L44 OS=Debaryomyces occidentalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ +FHKKAKTTKK+VL+L+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:   52 GQTKQIFHKKAKTTKKVVLKLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_CANTR (60S ribosomal protein L44 OS=Candida tropicalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG +L
Sbjct:   52 GQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44Q_CANMA (60S ribosomal protein L44 Q OS=Candida maltosa GN=RIM-C PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+ VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG +L
Sbjct:   52 GQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQAL 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36L_PONAB (60S ribosomal protein L36a-like OS=Pongo abelii GN=RPL36AL PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36L_HUMAN (60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_TAKRU (60S ribosomal protein L36a OS=Takifugu rubripes GN=rpl36a PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_RAT (60S ribosomal protein L36a OS=Rattus norvegicus GN=Rpl36a PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_PIG (60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
The following BLAST results are available for this feature:
BLAST of CX308697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL44_ASHGO2.918e-1566.0460S ribosomal protein L44 OS=Ashbya gossypii GN=RP... [more]
RL44_YARLI3.811e-1567.9260S ribosomal protein L44 OS=Yarrowia lipolytica G... [more]
RL44_DEBOC4.977e-1566.0460S ribosomal protein L44 OS=Debaryomyces occident... [more]
RL44_CANTR4.977e-1567.9260S ribosomal protein L44 OS=Candida tropicalis GN... [more]
RL44Q_CANMA4.977e-1567.9260S ribosomal protein L44 Q OS=Candida maltosa GN=... [more]
RL36L_PONAB3.567e-1367.3160S ribosomal protein L36a-like OS=Pongo abelii GN... [more]
RL36L_HUMAN3.567e-1367.3160S ribosomal protein L36a-like OS=Homo sapiens GN... [more]
RL36A_TAKRU3.567e-1367.3160S ribosomal protein L36a OS=Takifugu rubripes GN... [more]
RL36A_RAT3.567e-1367.3160S ribosomal protein L36a OS=Rattus norvegicus GN... [more]
RL36A_PIG3.567e-1367.3160S ribosomal protein L36a OS=Sus scrofa GN=RPL36A... [more]

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Properties
Property NameValue
Genbank descriptionC21002G11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308697 ID=CX308697; Name=CX308697; organism=Citrus clementina; type=EST; length=368bp
TTTTTTTTTTTTTTTTTTTTTTGGTCAAAAAATCCAAATCTAAAATTAAC
TGATATAATAAGCACTTAACAAACAACAGCTTCAAGTTTTAAATTAACAG
CACCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAAA
GTTCCATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATTAAGGCA
TTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAG
TGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCA
TTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAGA
CAGGCTCGGTCTGACCAC
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