CX308697

Overview
NameCX308697
Unique NameCX308697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15354 contig Ccv1_Contig15354:214..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_MOUSE (60S ribosomal protein L36a OS=Mus musculus GN=Rpl36a PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_ICTPU (60S ribosomal protein L36a OS=Ictalurus punctatus GN=rpl36a PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_HUMAN (60S ribosomal protein L36a OS=Homo sapiens GN=RPL36A PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_DICDI (60S ribosomal protein L36a OS=Dictyostelium discoideum GN=rpl36a PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  208 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 366
            GQT+PVFHKKAKTTKKIVLR++C  C +  Q  +KRCK FE+GG+KK K  ++
Sbjct:   50 GQTKPVFHKKAKTTKKIVLRMEC-SCGYKKQQVLKRCKRFELGGEKKSKNEAI 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_DANRE (60S ribosomal protein L36a OS=Danio rerio GN=rpl36a PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_BOVIN (60S ribosomal protein L36a OS=Bos taurus GN=RPL36A PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            GQT+P+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:   50 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_TRYBB (60S ribosomal protein L44 OS=Trypanosoma brucei brucei GN=RPL44 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -3
Query:  226 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 366
            GQT+P+FHKKAKTTKKIVL+LQC  CK + Q+ +KR KHFE+   KK
Sbjct:   52 GQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELNDKKK 98          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL44_PLAF7 (60S ribosomal protein L44 OS=Plasmodium falciparum (isolate 3D7) GN=RPL44 PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = -3
Query:  205 GQTEPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 366
            GQT+PVF KKAKTTKKIVL+L+C  CK      +KRCK FE+G DKK KG +++
Sbjct:   51 GQTKPVFKKKAKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMGADKKKKGGAVY 104          
BLAST of CX308697 vs. ExPASy Swiss-Prot
Match: RL36A_PAPAN (60S ribosomal protein L36a OS=Papio anubis GN=RPL36A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = -3
Query:  217 GQTEPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 366
            G T+P+F KKAKTTKKIVLRL+C    C+       KRCKHFE+GGDK  KG
Sbjct:   50 GHTKPIFWKKAKTTKKIVLRLECVEPNCRSERMLATKRCKHFELGGDKTRKG 101          
The following BLAST results are available for this feature:
BLAST of CX308697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL36A_MOUSE3.567e-1367.3160S ribosomal protein L36a OS=Mus musculus GN=Rpl3... [more]
RL36A_ICTPU3.567e-1367.3160S ribosomal protein L36a OS=Ictalurus punctatus ... [more]
RL36A_HUMAN3.567e-1367.3160S ribosomal protein L36a OS=Homo sapiens GN=RPL3... [more]
RL36A_DICDI3.567e-1362.2660S ribosomal protein L36a OS=Dictyostelium discoi... [more]
RL36A_DANRE3.567e-1367.3160S ribosomal protein L36a OS=Danio rerio GN=rpl36... [more]
RL36A_BOVIN3.567e-1367.3160S ribosomal protein L36a OS=Bos taurus GN=RPL36A... [more]
RL44_TRYBB1.038e-1265.9660S ribosomal protein L44 OS=Trypanosoma brucei br... [more]
RL44_PLAF71.770e-1261.1160S ribosomal protein L44 OS=Plasmodium falciparum... [more]
RL36A_PAPAN4.360e-1161.5460S ribosomal protein L36a OS=Papio anubis GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionC21002G11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308697 ID=CX308697; Name=CX308697; organism=Citrus clementina; type=EST; length=368bp
TTTTTTTTTTTTTTTTTTTTTTGGTCAAAAAATCCAAATCTAAAATTAAC
TGATATAATAAGCACTTAACAAACAACAGCTTCAAGTTTTAAATTAACAG
CACCAAACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAAA
GTTCCATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATTAAGGCA
TTTAGAAAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAG
TGCTTGCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCA
TTGGAGCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAGA
CAGGCTCGGTCTGACCAC
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