DY258332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3) HSP 1 Score: 179.874 bits (455), Expect = 1.001e-53 Identity = 89/164 (54.27%), Postives = 110/164 (67.07%), Query Frame = 1 Query: 79 ARPVIIIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 ARP +++V + S + LP V + IRPD+V F+ + +N Q +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MF P K++RRWHR +N QKRY P+L+ ARGH I+ V E+PLVVSD ES KT Sbjct: 3 ARP---LVTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKT 163 HSP 2 Score: 53.1434 bits (126), Expect = 1.001e-53 Identity = 30/91 (32.97%), Postives = 53/91 (58.24%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 L++ +AD +K +S+ R GK K++N + P+ +Y + A+ + F+N+P V + VE+++ LKLAPG +I T+ AF+ L Sbjct: 170 LRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD-AECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKL 259
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 4.125e-32 Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 247 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV 537 KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK +R+ P+LV ARGH I VP++P V Sbjct: 3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSV 99 HSP 2 Score: 54.6842 bits (130), Expect = 4.125e-32 Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 3 Query: 588 VLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 +LK+I AY+D K S+ IR G+ KM+ + PL VY + + + F+N+P V +VE + L LAPG I + AF+ L Sbjct: 124 LLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWPESAFKKL 215
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 5.618e-20 Identity = 46/158 (29.11%), Postives = 71/158 (44.94%), Query Frame = 1 Query: 97 IISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 +++++G++ + + LP+V RPDI+ + + QPY + +G S E+WG G +R+PR G + GGR P K R+W KIN + R LV R H E E+P VVS+ ESV++T Sbjct: 5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG-----RRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFE--GELPKVVSNELESVKRT 151 HSP 2 Score: 53.1434 bits (126), Expect = 5.618e-20 Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 3 Query: 585 KVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 +V + IG YAD ++AK+ + R G+ KM+ Y+ + L V + + + KNLP V V V+ ++ LAPG P + TK A E L Sbjct: 156 EVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDG-VVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSAVEYL 247
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.091e-19 Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 115 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 D+ + LPDV RPD++ N QPY AG +TSA WG+GR S +PR+ + + A RGGR P K K+N ++RY P+LV RGH E E+P+V ++ E ++KT Sbjct: 8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKT 152 HSP 2 Score: 40.4318 bits (93), Expect = 2.091e-19 Identity = 27/94 (28.72%), Postives = 46/94 (48.94%), Query Frame = 3 Query: 582 LKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 ++ L+ IG Y D +AK + IR G+ K++ Y + L + + E A + + +NL V V+ ++ LAPG + T+ A E L Sbjct: 156 IEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVL-IVAGESAPILKAARNLSGVDVATVDSLNAELLAPGTHAGRLTIWTESAVEKL 248
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.602e-19 Identity = 45/143 (31.47%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 + LP++ + RPD++ + QP+ + AG +TSAESWG+GR +++PR+ G + A GGR P K+ + ++IN +KR P LV RGH E ++PLV D E V +T Sbjct: 16 IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNG-----SRVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFE--GDLPLVFEDRFEEVTRT 151 HSP 2 Score: 42.743 bits (99), Expect = 4.602e-19 Identity = 28/97 (28.87%), Postives = 47/97 (48.45%), Query Frame = 3 Query: 582 LKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENLIKF 872 + L +G YAD ++AK S+ +R G+ M+ Y + L V G + + +NL V V V++++ LAPG + T+ A L +F Sbjct: 155 IAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV---TGGEPLRAARNLAGVDAVAVDQLNAELLAPGTQAGRLTIWTESAIRRLEEF 248
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 5.974e-19 Identity = 41/159 (25.79%), Postives = 75/159 (47.17%), Query Frame = 1 Query: 91 IIIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 567 + ++ ++G+ + + + LP +R D++ V + S QP AG +TSA S+G ++R+PRV G +G+ A GGR+ P +R ++N +K+ P+ V ARGH+ T +P+++ D E++ K Sbjct: 10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISK 158 HSP 2 Score: 55.4546 bits (132), Expect = 5.974e-19 Identity = 30/94 (31.91%), Postives = 48/94 (51.06%), Query Frame = 3 Query: 582 LKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 + +LK IG D ++ K+S+G+R GK KM+ Y ++ PL V S + + + N+P V V + + LAPG P + TK + L Sbjct: 163 MDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHKSPVVESASNIPGVNVVSANLVSVIHLAPGGHPGRLTIYTKSSINIL 256
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.982e-19 Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 115 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 567 D+ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVK 151 HSP 2 Score: 38.1206 bits (87), Expect = 5.982e-19 Identity = 27/94 (28.72%), Postives = 44/94 (46.81%), Query Frame = 3 Query: 582 LKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 + L+ G Y D +AK+ + IR GK K + Y + + L + + E + L + NLP V V ++ LAPG + T+ A N+ Sbjct: 156 ISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVL-IVTGEESLLSKAANNLPGVDVATVTALNAELLAPGTHAGRLTVWTQSAITNM 248
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.893e-18 Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 1 Query: 148 LPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 L V + RPD++ + QP V AG +TSA+S G G +R+ R G GAF GGR P K+ + H ++N ++ +V RGH +ETVP +PL+VSD ES++KT Sbjct: 18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKT 152 HSP 2 Score: 41.5874 bits (96), Expect = 2.893e-18 Identity = 29/96 (30.21%), Postives = 43/96 (44.79%), Query Frame = 3 Query: 582 LKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENLIK 869 L+ K +G D Q+AKD IR G K++ Y + L V S + KNLP V + + + +APGA + T+ A E + K Sbjct: 156 LETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVVVSG-ACDAVKASKNLPGVDVISANDLGVMHIAPGADSGRLTLWTESAVEEINK 250
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.760e-18 Identity = 43/143 (30.07%), Postives = 64/143 (44.76%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 + LP V RPD++ + QP AG + E+ G G +++R+ R+ + AF RGGR P K+ + IN +KR LV ARGH I+ VP++PL+V D + V+KT Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKT 154 HSP 2 Score: 49.6766 bits (117), Expect = 3.760e-18 Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 3 Query: 585 KVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSP-EGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 ++ K++G + D +AK+ G+R GK KM+ Y ++ PL V EG L G +N P V V V+ + LAPG P + T A E L Sbjct: 159 EIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKNEGIVL--GARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERL 250
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.343e-17 Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 91 IIIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 I + S+EG+ + + + LP++ RPD++ + QP+ AG +TSA+S+G GR V+ +PR+ G + AF GGR P + + +H +IN ++R LV ARGH+IE VP++PLVV D +++T Sbjct: 3 IKVYSLEGEAIDE----MELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRT 153 The following BLAST results are available for this feature:
BLAST of DY258332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258332 ID=DY258332; Name=DY258332; organism=Citrus clementina; type=EST; length=1272bpback to top |