DY258332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.399e-17 Identity = 44/146 (30.14%), Postives = 66/146 (45.21%), Query Frame = 1 Query: 133 SSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 + +V LP + + + RPD++G S N Q Y AG +T AES+G+GR ++ IPR R A GR P K + + +ND +++ V RGH + ++PLVVSD E + KT Sbjct: 13 AGSVELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAV-----SGRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKT 151 HSP 2 Score: 43.8986 bits (102), Expect = 1.399e-17 Identity = 29/97 (29.90%), Postives = 49/97 (50.52%), Query Frame = 3 Query: 573 QLPLKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 Q L VL+ +GA AD ++A++ + +R G+ K + Y + L V S E ++ +NL V +++ LAPGA P + T+ A E + Sbjct: 152 QEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKYSQPKSVLVVTSEEPSRAA---RNLSGVDVATAREVNAEDLAPGAHPGRLTLWTESAIEEV 245
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.362e-17 Identity = 41/143 (28.67%), Postives = 62/143 (43.36%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V ARGH I+ VP++PL+V D + V KT Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKT 154 HSP 2 Score: 50.447 bits (119), Expect = 2.362e-17 Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 585 KVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 ++ K++G + D ++AK+ GIR GK KM+ Y ++ PL V + + G +N P V V V+ + LAPG P + T A E L Sbjct: 159 EIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIVVG-KNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERL 250
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.067e-17 Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 1 Query: 94 IIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVE 564 +I+ +G+ V + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++ND +K+ V ARGH + P+VV+D S++ Sbjct: 11 VILDKDGNKVKE----VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLK 158 HSP 2 Score: 46.2098 bits (108), Expect = 3.067e-17 Identity = 24/75 (32.00%), Postives = 39/75 (52.00%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGA 815 L++IG Y D ++ K+ IR GK KM+ Y S PL + + + + +N+ V V + + + LAPGA Sbjct: 167 LEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGA 241
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.067e-17 Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 1 Query: 94 IIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVE 564 +I+ +G+ V + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++ND +K+ V ARGH + P+VV+D S++ Sbjct: 11 VILDKDGNKVKE----VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLK 158 HSP 2 Score: 46.2098 bits (108), Expect = 3.067e-17 Identity = 24/75 (32.00%), Postives = 39/75 (52.00%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGA 815 L++IG Y D ++ K+ IR GK KM+ Y S PL + + + + +N+ V V + + + LAPGA Sbjct: 167 LEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGA 241
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.067e-17 Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 1 Query: 94 IIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVE 564 +I+ +G+ V + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++ND +K+ V ARGH + P+VV+D S++ Sbjct: 11 VILDKDGNKVKE----VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLK 158 HSP 2 Score: 46.2098 bits (108), Expect = 3.067e-17 Identity = 24/77 (31.17%), Postives = 39/77 (50.65%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPP 821 L++IG Y D ++ K+ IR GK KM+ Y PL + + + + +N+ V V + + + LAPGA P Sbjct: 167 LEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHP 243
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.067e-17 Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 1 Query: 94 IIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVE 564 +I+ +G+ V + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++ND +K+ V ARGH + P+VV+D S++ Sbjct: 11 VILDKDGNKVKE----VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLK 158 HSP 2 Score: 46.2098 bits (108), Expect = 3.067e-17 Identity = 24/77 (31.17%), Postives = 39/77 (50.65%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPP 821 L++IG Y D ++ K+ IR GK KM+ Y PL + + + + +N+ V V + + + LAPGA P Sbjct: 167 LEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHP 243
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.067e-17 Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 1 Query: 94 IIISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVE 564 +I+ +G+ V + V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++ND +K+ V ARGH + P+VV+D S++ Sbjct: 11 VILDKDGNKVKE----VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLK 158 HSP 2 Score: 46.2098 bits (108), Expect = 3.067e-17 Identity = 24/77 (31.17%), Postives = 39/77 (50.65%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPP 821 L++IG Y D ++ K+ IR GK KM+ Y PL + + + + +N+ V V + + + LAPGA P Sbjct: 167 LEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHP 243
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.073e-17 Identity = 48/143 (33.57%), Postives = 66/143 (46.15%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ E + KT Sbjct: 16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKT 152 HSP 2 Score: 36.965 bits (84), Expect = 3.073e-17 Identity = 25/94 (26.60%), Postives = 42/94 (44.68%), Query Frame = 3 Query: 582 LKVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 L V K + AD +KAKD I+ G+AK++ Y + L V + + +NL V + + + +APG + T+ A E + Sbjct: 156 LDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKYKKPRSVLVVVG-DACEAIAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKI 248
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 5.191e-17 Identity = 39/143 (27.27%), Postives = 62/143 (43.36%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V +RGH ++ VP++PL+V D + V KT Sbjct: 16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKT 154 HSP 2 Score: 50.8322 bits (120), Expect = 5.191e-17 Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 585 KVLKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863 ++ K++G + D ++AK+ G+R GK KM+ Y ++ PL V + + G +N P V V V+ + LAPG P + T A E L Sbjct: 159 EIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIVVG-KNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERL 250
BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 8.761e-17 Identity = 42/158 (26.58%), Postives = 72/158 (45.57%), Query Frame = 1 Query: 97 IISVEGDMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570 I+ +G+ + + V LP + +R D++ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ + N +KR + V ARGH + P+VV+D +++ T Sbjct: 12 ILDKDGNRIKE----VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTT 160 HSP 2 Score: 48.9062 bits (115), Expect = 8.761e-17 Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 3 Query: 591 LKQIGAYADAQKAKDSQGIRPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPP 821 LK+IG Y D ++ K+ IR GK KM+ Y PL + + + + +NL V V + + + LAPGA P Sbjct: 167 LKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHP 243 The following BLAST results are available for this feature:
BLAST of DY258332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258332 ID=DY258332; Name=DY258332; organism=Citrus clementina; type=EST; length=1272bpback to top |