DY258332

Overview
NameDY258332
Unique NameDY258332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258332 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.114e-11
Identity = 46/153 (30.07%), Postives = 63/153 (41.18%), Query Frame = 1 
Query:  142 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGNMCRG--GRMFTPTKIWRRWHRKINDNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 570
            + LP      IR D++      I  +  QPY  S  AG Q SA       SW T  GR +SR+ R               N+ +   G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIID--KPVPIVV-DGLEQLRKT 165

HSP 2 Score: 38.5058 bits (88), Expect = 7.114e-11
Identity = 23/72 (31.94%), Postives = 36/72 (50.00%), Query Frame = 3 
Query:  648 RPGKAKMKNTLYISSQDPLDVYSPEGAKLCQGFKNLPRVKGVKVEKIDWLKLAPGAPPEGVIA*TKPAFENL 863
            R GK K +   YI  + PL V +    +L +   N+P +   +V  ++   LAPGA P  ++  +K A E L
Sbjct:  190 RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDALETL 261
The following BLAST results are available for this feature:
BLAST of DY258332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL4_NANEQ7.114e-1130.0750S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258332 ID=DY258332; Name=DY258332; organism=Citrus clementina; type=EST; length=1272bp
TTTATACCTACCAAATAGAATCTGGCCCTTTCCCCATACCTGCCCTAGAT
TTAATGAATGGACCGATGGTGGCACCTCGCCCGTCCTGTGATTATCATCA
TTTCTGTGGAAGGTGACATGGTGACCGACGCAAGCTCCACCGTCCCTTTG
CCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCA
CTCTAACATCTCCCAGAACAGTCCCCAGCCTTACGCCGTTTCCAGGAAGG
CAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCC
CGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGC
CTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCACTCCCACAAAGATCT
GGCGCCGATGGCACCGTAAGATCAACGACAATCAGAAGCGATACGCCATC
GTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGG
TCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCG
CCGAGAGTGTGGAGAAAACCATCAGCTGCCCTTAAAAGTCCTGAAGCAGA
TCGGTGCCTATGCTGACGCCCAAAAGGCCAAGGACAGCCAGGGGATTCGC
CCTGGAAAGGCTAAAATGAAAAATACGCTTTACATTTCATCCCAGGACCC
GCTTGATGTGTACTCCCCCGAAGGTGCCAAGCTTTGCCAAGGCTTTAAGA
ACCTTCCCCGTGTTAAGGGTGTGAAAGTTGAAAAAATTGACTGGTTGAAA
CTTGCCCCCGGGGCCCCCCCTGAGGGGGTTATCGCTTGAACCAAACCCGC
TTTTGAAAACTTGATAAAATTTATGGAAAGTTGAAAAGGGTCCCCAAAAA
AAAAAAGGGTGAAGTCGCCCCCCCCGCCAAACATGGCACACCCTGATTTT
GTCTTAATTTTTAAAACCCAAAAGGAAGGGCCTGCCCGTCGAAAGGCCAA
TTCACACTAAAGGTAAAAACGCTTCAATGAAAAAAAAAACCCCCCCCCAA
AAATTCTAAACTAAAGTGTGGCCGGTTAAACCCCTATATTCAAAACCTGG
TCGCGAGAAAGTCTCCCTTTTGCCGGCAGGGCACCCACGGCGTAATATAC
CATAAAAAAAAAAAAAAACCCCACAACAAACAAAAAAAAAAAACCCCCCC
CCCCCCCACCACGACAACGAGAGGCCCTTCCCCCGCCCAACTTCACTTGC
CTCGCCCCGGGCGCGCGCGCAG
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